Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01111 ATGGCCGATGAGGATATTCAACCACTCGTCTGTGATAACGGGACAGGAATGGTTAAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCTGTGTTTCCTAGCATTGTTGGCCGACCACGCCACACAGGTGTGATGGTTGGCATGGGACAAAAAGATGCATATGTTGGAGATGAAGCTCAGTCCAAACGTGGTATATTGACTCTAAAATATCCAATTGAACATGGTATTGTGAGTAACTGGGATGATATGGAGAAGATTTGGCATCACACCTTCTACAATGAACTCCGTGTTGCCCCCGAGGAGCACCCGGTTTTGCTCACCGAAGCACCTCTTAACCCTAAGGCTAATCGCGAGAAAATGACACAAATTATGTTTGAGACATTCAATACTCCTGCAATGTATGTTGCCATCCAGGCCGTTCTATCGCTTTATGCCAGTGGTCGAACAACCGGTATTGTTCTGGACTCTGGAGATGGTGTGAGCCACACTGTACCTATTTATGAAGGGTACGCCCTTCCACATGCTATCCTTCGTCTCGATTTAGCAGGTCGTGACCTCACCGATGCCTTGATGAAAATCCTAACTGAGCGTGGCTATTCGTTCACTACTACAGCCGAGCGTGAAATTGTTAGAGATGTGAAGGAAAAACTGGCTTACATTGCACTTGATTATCAGCAAGAGCTTGAAACTTCGAGAACAAGTTCTTCTGTTGAGAAGAGCTATGAGCTTCCTGATGGACAGATCATCACCATTGGCGCTGAGCGTTTTCGTTGTCCTGAGGTTCTTTTCCAGCCATCCATGATTGGAATGGAAGCCGTTGGCATTCACGAAACCACGTACAACTCAATTATGAAGTGTGATGTTGATATCAGAAAGGATTTGTATGGAAACATAGTACTCAGTGGTGGTTCTACCATGTTTCCTGGTATTGCTGACAGAATGAGCAAGGAAATTTCCGCTTTGGCTCCAAGCAGCATGAAGATCAAGGTGGTGGCTCCGCCCGAGAGAAAATACAGTGTCTGGATTGGTGGCTCTATCTTAGCTTCTCTTAGTACTTTTCAACAGATGTGGATTGCAAAGGCCGAGTATGACGAATCCGGTCCTTCGATTGTACACAGGAAATGCTTTTAG 1131 0.458 MADEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYQQELETSRTSSSVEKSYELPDGQIITIGAERFRCPEVLFQPSMIGMEAVGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01111 376 SUPERFAMILY Actin-like ATPase domain 148 376 IPR043129 -
Vifa1g01111 376 SMART actin_3 6 376 IPR004000 -
Vifa1g01111 376 ProSitePatterns Actins and actin-related proteins signature. 105 117 IPR020902 -
Vifa1g01111 376 FunFam Actin, muscle 181 272 - -
Vifa1g01111 376 FunFam Actin, alpha skeletal muscle 330 376 - -
Vifa1g01111 376 ProSitePatterns Actins signature 2. 357 365 IPR004001 -
Vifa1g01111 376 FunFam Actin, alpha skeletal muscle 255 329 - -
Vifa1g01111 376 Gene3D - 9 370 - -
Vifa1g01111 376 PRINTS Actin signature 237 253 IPR004000 -
Vifa1g01111 376 PRINTS Actin signature 50 61 IPR004000 -
Vifa1g01111 376 PRINTS Actin signature 116 129 IPR004000 -
Vifa1g01111 376 PRINTS Actin signature 27 36 IPR004000 -
Vifa1g01111 376 PRINTS Actin signature 62 84 IPR004000 -
Vifa1g01111 376 PRINTS Actin signature 141 160 IPR004000 -
Vifa1g01111 376 PANTHER ACTIN 8 369 IPR004000 -
Vifa1g01111 376 CDD NBD_sugar-kinase_HSP70_actin 9 182 - -
Vifa1g01111 376 SUPERFAMILY Actin-like ATPase domain 5 154 IPR043129 -
Vifa1g01111 376 ProSitePatterns Actins signature 1. 54 64 IPR004001 -
Vifa1g01111 376 Gene3D Actin; Chain A, domain 4 181 272 - -
Vifa1g01111 376 Gene3D - 139 339 - -
Vifa1g01111 376 FunFam Actin, alpha skeletal muscle 2 177 - -
Vifa1g01111 376 Pfam Actin 5 376 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01111 Vifa-Chr1 181913927 181915349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01111 1 376 Cytoskeleton Gene Families AT3G12110 96.286 0.0 759
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01111 K10355 - gmx:100815472 745.347