Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01110 ATGGAGAATCATTCCAATTCGCATCCCAATTCGCGTGATTCCTCACCTACCTCACGCGAATTGCTCGATAACGATCACCGTTCATCGTTCGATGAACCACCACCTTCCATCACTAAGCGAGTCAAACTGATCTGTAGCTTCGGTGGAAAAATCCAGCCGAGGCTTCACGACGGTCACTTTTCGTACATCGGAGGTGACACCAAAATCCTCGCCGTCGATCGTAATATCAAGTTATCAAACCTCATTGGTAAGCTCACTGCTATGGCGTATTCTCATGTCTGTTTCAAGTATCAACTCCCTGGTGAAGATCTCGATGCTTTGATCTCGGTTTGCAATGAAGATGATCTCGATTATATGATGATTGAGTATGATCGTCTGTGTCGCGCTTTACCTAAGCCTGCGAGGTTGAGGCTCTTCCTTTTCCCTTCCCCTGTCAAGAACCACAGCAGCAATGCGTCTTTTGATTCTATCAATTCTGCTATGAATCTTGCCGAGGATTCCAAATCGGAAGGTAAGTGGTTCGTTGAAGCTCTCAATTCCGTTCACATTCCGGCATCGGATGATTCTTCTCCACCTCCTCCGCCGTCTACGGTGAATCCAGATTATCTGTTCGGTTTAGATAAGCCGTATTCTCCAACTTCTGAGGAGAAACAGGCGGAAATCCCGGAGTCTGTTCCGGATTTCGCGGCGAAGGATACCGGATGTGAGCCGGAGACGGTTAGAGAAACCGAGATTCATGAAATTCAGAGAATGCAACCTGTGAGTTTTGACGGAGAGAACGGCAGAGTTAACGGCTGTGTTGACAGGTACTGTCAGGGGAACACGGAAACTGAGATGCCGTTAGTTACATCTGTACCTGTTGAAGCTGTGAGTGATGAACAACAAATGAATTCTGACAGAGAAAACGGCGGAGTTAACGCCTCTGTTGACTGTTACTCTCAGGAAAACACGGAAACGGAGACGCCGTTAGTTACTGGTGCATCTGTTCAAGCTGTGAATGATGAACAGAAAGTGAACTCTGACGGAGAAAACGGCAGAGTTAACGGTAATGATAATGCGGACTGTTACACTCAGGAAAACTCGGAAACAGAGATGCCGTTAGTTACAACTGTACTACCTGTTCAAGTTCCTGCTCCGGCACCGATTCATTTCGGTTCGGTTCAGTTTCATGCTCCTGGACCAGTTTCGGCTCAGTCATCATTTTCTCCTATGATGCCGAGTTTGGTTAGTGCTTACTCGGCTGGTTATCCAAATGAACCGATACCGGTTTATCTGATTAGAACACCTTCAGGATTGTACCAAGCAGTGAGGCCATTCATCGGAGCTACCGGTGAACCGGTTTATTTTGCATATACGCAAATTAGGAACGACTTTGGTTACAATGGATCAGGGCTACCTGGCATGGTTTCTGAGCGCGGCTATTCAAATGGTTCGTATAGGCAAGGTTTTCCATCTCAGGCGGCGGTTGCCGGTGTTGACAGCTGGAATTGA 1491 0.4715 MENHSNSHPNSRDSSPTSRELLDNDHRSSFDEPPPSITKRVKLICSFGGKIQPRLHDGHFSYIGGDTKILAVDRNIKLSNLIGKLTAMAYSHVCFKYQLPGEDLDALISVCNEDDLDYMMIEYDRLCRALPKPARLRLFLFPSPVKNHSSNASFDSINSAMNLAEDSKSEGKWFVEALNSVHIPASDDSSPPPPPSTVNPDYLFGLDKPYSPTSEEKQAEIPESVPDFAAKDTGCEPETVRETEIHEIQRMQPVSFDGENGRVNGCVDRYCQGNTETEMPLVTSVPVEAVSDEQQMNSDRENGGVNASVDCYSQENTETETPLVTGASVQAVNDEQKVNSDGENGRVNGNDNADCYTQENSETEMPLVTTVLPVQVPAPAPIHFGSVQFHAPGPVSAQSSFSPMMPSLVSAYSAGYPNEPIPVYLIRTPSGLYQAVRPFIGATGEPVYFAYTQIRNDFGYNGSGLPGMVSERGYSNGSYRQGFPSQAAVAGVDSWN 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01110 496 SUPERFAMILY CAD & PB1 domains 56 149 - -
Vifa1g01110 496 PANTHER OS05G0427100 PROTEIN-RELATED 9 381 - -
Vifa1g01110 496 Pfam PB1 domain 58 142 IPR000270 GO:0005515
Vifa1g01110 496 CDD PB1_UP2 44 141 - -
Vifa1g01110 496 SMART PB1_new 55 143 IPR000270 GO:0005515
Vifa1g01110 496 MobiDBLite consensus disorder prediction 184 238 - -
Vifa1g01110 496 MobiDBLite consensus disorder prediction 1 35 - -
Vifa1g01110 496 Gene3D - 61 142 - -
Vifa1g01110 496 MobiDBLite consensus disorder prediction 18 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01110 Vifa-Chr1 181710283 181711773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01110 31 181 MAP Kinase Kinase Kinase AT5G57610 39.073 1.01e-24 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01110 - - psat:127118644 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01110 1 181710283 181711773 Vifa1g01110 1 181710283 181711773 ECH