LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g01109	ATGAAGCTTTTGATCCCTTCACACACTCTTCCCTTTTCCTCTCTATCCCAAACCCAACCCATGGAACAACAACAATCTTCACCTACTAACCCTGATCAAGTTCATCTTGCCGTTGGTAAATCGCTTCACAAAACCACTACCTTGCTTCGATGGACTATTACTCACTTTCTGAATGCGGAAATTGTTATTCTTCATGTTTATCAACCTTCTCCCGTTATACCTACTTTATTGGGGAAAATGCCAGCATCACAAGCTAATCCTGAAGTGGTGTCTGCTTTTAGAAGAGAGGAAAGAGAACAGACCATGAGATTAACTGATAAGTATTTGAGAATTTGCTTTGCATCTAAGGTGAAGGCGAGCGTTATTGTAACGGAAGCCAACCAAGTCCAAAAAGGAATTGTTGATTTGGTTGTTAAGCATAATATTACAAAGCTTGTCATTGGAGCGGAGTCGGAAAATTGCTTGAAAGTGAAAAGGAATTCCGGGAAAGCAAATTACACTTCCAAACATGCTCCGCTGTTTTGTGAAATATGGTTTATATATAAAGGAAGACACATTTGGACAAGAGAGGCTTCTGAAAAACCATGTTCTTTGTCTTCAGGCGCTCAACCTGAAATTGCAGCAACAGAAAGCTTGAGATTAAGATCTTCTCAAAATGGTCAGAACGAATTACCCCATTCGGAATATATTCTACCAAATTCTGCTAGAACAACAGCATGTTCTGGAATTAGAAGCTTGGATCTGGGTGAAATCATAGAAACTGAAGCCACTAATTCATCCAAATCGTCCAGTGGTAGCAGTTATTGTTCTCCGCAAAATTCTGTTGGGGTTTATCAGGATTCATATTCAGTGGACATGCAAGAAAGAATTAACAGTCAACTTATTGAAACCGAAAGAGAAGCTGAGGCAGCAACAGATGATTTCTTTGCAGAACTATTAAACTGCAGGAGGTTGGAAATTGAAGCCATGGAAGCCATACAGAAGGTCAAATTGTTTGAATCTGCCCATGCACATGAGGTGGAGCTCAGGAAAGAGGCTGAGGATGCACTTAGAGTTACCGTAACAGAACAACAAAAGCTCTTAGAAGAGAGTGAAAATATTTCCGGAGAGCTACAAATGACCATGAGAAATGTGGCCCTACTAGATAGCCGTGCTAAGGAAGCAACCCGTAGGCGAGACGAAGCTGCACACGAGCTCCTGCTAATTCAAACATCCATATCAACCTTGTGGCAAGAAAGGCAGCAGATCAGGAGACAGAAAATGGAAGCCCTCCGCTGGCTGGAACGGTGGAAAAATCGTGGTCAAATCGGAGCAGCACATTACAACGGGGTCATTGGATTTGCCGAAGAACTGCCTGAGTTAGCGGAATTTTCATTATCAGATATTGAAAATGCTACATGTAATTTTTCCAAGAGCTTTGAAATTGCGCAAGGTGGCTTTGGTTGTATATATAAGGGGGAAATGTTGGGTAGAACTGTTGTTATAAAGAAGTTCCATCAACATAATGTGCAAGGACCTGCAGAGTTTCATCAAGAGGTTCAAGTTCTTAGTAGTCTCCAACATCCTCATTTATTGACCTTGCTTGGTGTTTGCCCCAAAGCCTGGTCAATTGTATATGAGTATCTCCCTAATGGAACTCTTAAAGACTACCTATTCCGTAAAAGTAACGTTATCCCTTTGACATGGAATATCAGAGCACGAATGATTTCCGAAATTTCTAGTGCACTCTGCTTCTTACATTCTTTTAAGCCGGAAGCTATTATCCACGGTTATCTTAAGCCTGAGACTATACTTCTTGATTCTTCACTTAGTTGCAAGCTATGTGAATTCAGGTTCAGCAGGCTTGTGACAGAAGAGTCTCTCTATAGTGCTAGTTTCCACTTGAGCTCAGAGCCAAAGGGTGCTTTCACATATACGGATCCCGAGTTTCAGAGAACTGGGGTAATGACACCCAAGACTCCAGTTGGATTAGCAGTTCTAGTTCGCCATGCAGTTTCATGTGGAAAATTGTCTTCAATTCTTGATTCTTCATCTGGAGAATGGCCTTTATCTGTGGCATCACGGTTGGCCGAACTGGGTTTGCAATGTTGCGCACAAAATCGCAGAAACAGGCCAGAGTTAACACCTGCTCTTGTGAGAGAATTGGAACAGTTACATGTTTCAGAAGAGAGACTCGTACCGTCGTTTTTTTTATGTCCAATCCTTCAGGAAATAATGCATGATCCTCAAATTGCAGCAGATGGATTTACATACGAAGGGGATGCCATACGCGAATGGTTAGAAAATGGACATGATACTTCTCCAATGACTAATTTAAAATTGATTCACTTGCTTCTCACTCCCAATCACTCGATTAGACTTGCCATCCAAGATTGGCTCTGCAAGTCATAA	2391	0.4153	MKLLIPSHTLPFSSLSQTQPMEQQQSSPTNPDQVHLAVGKSLHKTTTLLRWTITHFLNAEIVILHVYQPSPVIPTLLGKMPASQANPEVVSAFRREEREQTMRLTDKYLRICFASKVKASVIVTEANQVQKGIVDLVVKHNITKLVIGAESENCLKVKRNSGKANYTSKHAPLFCEIWFIYKGRHIWTREASEKPCSLSSGAQPEIAATESLRLRSSQNGQNELPHSEYILPNSARTTACSGIRSLDLGEIIETEATNSSKSSSGSSYCSPQNSVGVYQDSYSVDMQERINSQLIETEREAEAATDDFFAELLNCRRLEIEAMEAIQKVKLFESAHAHEVELRKEAEDALRVTVTEQQKLLEESENISGELQMTMRNVALLDSRAKEATRRRDEAAHELLLIQTSISTLWQERQQIRRQKMEALRWLERWKNRGQIGAAHYNGVIGFAEELPELAEFSLSDIENATCNFSKSFEIAQGGFGCIYKGEMLGRTVVIKKFHQHNVQGPAEFHQEVQVLSSLQHPHLLTLLGVCPKAWSIVYEYLPNGTLKDYLFRKSNVIPLTWNIRARMISEISSALCFLHSFKPEAIIHGYLKPETILLDSSLSCKLCEFRFSRLVTEESLYSASFHLSSEPKGAFTYTDPEFQRTGVMTPKTPVGLAVLVRHAVSCGKLSSILDSSSGEWPLSVASRLAELGLQCCAQNRRNRPELTPALVRELEQLHVSEERLVPSFFLCPILQEIMHDPQIAADGFTYEGDAIREWLENGHDTSPMTNLKLIHLLLTPNHSIRLAIQDWLCKS	796

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g01109	796	CDD	RING-Ubox_WDSUB1-like	727	782	-	-
	Vifa1g01109	796	Coils	Coil	287	307	-	-
	Vifa1g01109	796	Pfam	U-box domain	726	795	IPR003613	GO:0004842\|GO:0016567
	Vifa1g01109	796	Coils	Coil	378	398	-	-
	Vifa1g01109	796	MobiDBLite	consensus disorder prediction	1	33	-	-
	Vifa1g01109	796	ProSiteProfiles	U-box domain profile.	725	796	IPR003613	GO:0004842\|GO:0016567
	Vifa1g01109	796	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	51	153	-	-
	Vifa1g01109	796	SMART	Ubox_2	729	792	IPR003613	GO:0004842\|GO:0016567
	Vifa1g01109	796	PANTHER	OS02G0152300 PROTEIN	34	790	-	-
	Vifa1g01109	796	Gene3D	Transferase(Phosphotransferase) domain 1	542	725	-	-
	Vifa1g01109	796	ProSiteProfiles	Protein kinase domain profile.	469	718	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g01109	796	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	726	796	IPR013083	-
	Vifa1g01109	796	Gene3D	Phosphorylase Kinase; domain 1	446	541	-	-
	Vifa1g01109	796	CDD	STK_N	34	183	-	-
	Vifa1g01109	796	Pfam	Protein tyrosine and serine/threonine kinase	474	652	IPR001245	GO:0004672\|GO:0006468
	Vifa1g01109	796	SUPERFAMILY	RING/U-box	726	795	-	-
	Vifa1g01109	796	SUPERFAMILY	Protein kinase-like (PK-like)	453	716	IPR011009	-
	Vifa1g01109	796	MobiDBLite	consensus disorder prediction	9	33	-	-
	Vifa1g01109	796	Gene3D	HUPs	28	172	IPR014729	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g01109	Vifa-Chr1	181452814	181457263	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g01109	32	793	U-box Gene Family	AT2G45910	34.410	1.89e-148	454

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Vifa1g01109		PK_Tyr_Ser-Thr	1.8e-22	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g01109	-		-	gmx:100788846	1192.18