Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01108 ATGGGAAACCAGATGATTGATTCAGAGAAATCCAGTGTTGGAATTCAGAAAGTTAATCAAGGATGTGTTTGGAGCTGGTTTCATATTCTTGATTATCATCATTGGGGTGTCAAAAGGGCTTTTCGTCATAGAAAGAAAAGACAGGCTAAAAATAAGAGAAAGACCACTTTGCAAGACCAACAAAATGCAGTTACAGAAGCAGAATCTTCCTTGGTCAATCAACATAGAGAAACATCAAATGCCAGTAGCGAGAATGCACTTCCTCAGAAGAAAGATGGAAAATCAGCAGAAAGTTCCCTTAGCAGAAACATTTCTATTAAGTTTAAGAACAATGATGATGTTTTGGAGATAGTTAGTATGGAGAAGAATTTATTACTCAAGTTTCTAAAAGATATCGACTTCAGCGGTAAAAAAAATCATAAAGCTTCTTATAACAAAGCAAGATTGACAAAATCAGGAACCTTTCCTTTACCCGCGTCTGCTAAGACGAAAAACATTAGTTCTAGTACCTTCCGATCCAAGCAAGCCAAAATTTGGAACTTCCCCAAAGGAGAAAACTTCCTTGTAGGAACTCAGGCACCAAAAAAGTTTGGATCCAATTCAGTGAACGATGTTTCTTATGAATCGCAGAAGCCTTCCGCGAGTGATCTTGGAACCGATAGTGCCGTGGAAAAAAGTCCAAGCGTTTCTTCGAGGCGTTCTGAAGGATTAAGCCACAAAGGGTGGAATCAAGTGGTTCTTCATCAGTTCAAAGTTATAAAACAGAAGATCAAACAAGCAGTTGTTGAACTAAAAAAAAGTAGTCACCAAACATCGGTTTACGCTATCCACAACAACGAGAAAGAGATCTCAGAAAGCGTAGACGACGGCGCGATTCAAGAATACAAAACAAGTAGAAGCTTGAATGAGACCAAGGCTTTTGATTCTGATGTTGATTCCAACAAACGTGAAGTTCGCCTTCTTAGCGAGTCGATGGATAGATATACTCAGTTGTTTGAGAAAAGCTTAAGCAAAGAAATCAAGTGGAAAAGCTCAAAGTCTAAAAGCTTAAAATTGACAAATGATGTCGATAGCAATATTCACAAGAGTAGGCATGCTCCTAGGTTTGTAAGAAGCAATTGTTCTATGCCGAATCTCGAGTCTTTAGAATTCATTCTACAAGAAGCTCTCCTTGATACAAAGGATATAGGAAATAATGCAGTGGAAAGTGATATCGACGCTGGAACTGATGAAACAGTTGAAGGGAGTAGCAGAGTTGTGAATCCTAGTCATTTATCTGATAAGATAGCGGAGAAAATTGAAGGAGTTACCTATGACCGAAGCGATGAAAGTTTTCCTCAAGAAAATATGGAAGTAAGCATGATGAATACTTTTCTTAGCAAGGAGGTAACAACATCACTTGAAACTAGCTTTCAAGACAGTACAATCAACCAAGCACAAGGTAAAGAGTCGAATACACGAGGAGACTCAAACACTAGTATAACCGCGGAAGACACAAACAAGAGTCTTGAAAATCATTTCCTGAACTTCAAATCGTATACAGAAAACGATTCCAATTTCAAATATGTGAAAGATATTCTTGAATACTCCGGTTTCATAGGAAATGAACAGATTCAAACGCGATACACGGTAGACCAGCCAATAAAACCATCCTTATTCGTAGCATTAGAAGAATCTTTGCTTCATGAAAACGAGTATTCTGCAGAAGAGAATAGCAACATGTTTGATCACCAGCTTCTCTTTAACTTGATTAACGAGACACTGTTTGAAATATATGAAAAGTCACCAACATACTTTCCTAGACCTTTCGCCTTCAACCATCGGCTCAAACCAATGCCAAAAGGAAACTATATTGTTAAAGAAGTATGGGATAATGTTAGTTCATATTTGAGTTTGAGACCAGAGTTAGATCAGACATTAGACGATGTTGTTGGTCGTGATTTGATAAAAAGAAGTGGCGGATGGATGAATCTTCAACAGGAAGAGGAGTGTGTAGCACTTGATTTTGAGGAAATGATCATAGATGATTTATTAGATGAAATCATCTTCTCTTGA 2055 0.3776 MGNQMIDSEKSSVGIQKVNQGCVWSWFHILDYHHWGVKRAFRHRKKRQAKNKRKTTLQDQQNAVTEAESSLVNQHRETSNASSENALPQKKDGKSAESSLSRNISIKFKNNDDVLEIVSMEKNLLLKFLKDIDFSGKKNHKASYNKARLTKSGTFPLPASAKTKNISSSTFRSKQAKIWNFPKGENFLVGTQAPKKFGSNSVNDVSYESQKPSASDLGTDSAVEKSPSVSSRRSEGLSHKGWNQVVLHQFKVIKQKIKQAVVELKKSSHQTSVYAIHNNEKEISESVDDGAIQEYKTSRSLNETKAFDSDVDSNKREVRLLSESMDRYTQLFEKSLSKEIKWKSSKSKSLKLTNDVDSNIHKSRHAPRFVRSNCSMPNLESLEFILQEALLDTKDIGNNAVESDIDAGTDETVEGSSRVVNPSHLSDKIAEKIEGVTYDRSDESFPQENMEVSMMNTFLSKEVTTSLETSFQDSTINQAQGKESNTRGDSNTSITAEDTNKSLENHFLNFKSYTENDSNFKYVKDILEYSGFIGNEQIQTRYTVDQPIKPSLFVALEESLLHENEYSAEENSNMFDHQLLFNLINETLFEIYEKSPTYFPRPFAFNHRLKPMPKGNYIVKEVWDNVSSYLSLRPELDQTLDDVVGRDLIKRSGGWMNLQQEEECVALDFEEMIIDDLLDEIIFS 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01108 684 MobiDBLite consensus disorder prediction 199 237 - -
Vifa1g01108 684 PANTHER PROTEIN TRM32 67 684 IPR044257 -
Vifa1g01108 684 Coils Coil 57 77 - -
Vifa1g01108 684 Pfam Domain of unknown function (DUF4378) 520 680 IPR025486 -
Vifa1g01108 684 MobiDBLite consensus disorder prediction 42 100 - -
Vifa1g01108 684 MobiDBLite consensus disorder prediction 55 100 - -
Vifa1g01108 684 MobiDBLite consensus disorder prediction 471 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01108 Vifa-Chr1 181250569 181253373 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01108 113 674 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 27.959 9.69e-43 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01108 - - cam:101509220 772.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01108 1 181250569 181253373 Vifa1g01108 1 181250569 181253373 ECH