Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01100 ATGGGAGTTTGTTTAAGCGCTCAAATCAAAGCTGAAACTCCTTATAACACTGGGTTAAATTCAAAGAATTCTGCTTCAGCTGGAAATGATCTGAGCAGCTCAAACAGTAAGGTTTCAGCTGCATCAGTGCCTCAGACTCCTCGGAGCGAAGCTAAACCTGGTACTGGAATTGTTATTGCTGTTAAAAGACTTAATCTTGAAGGCTTCCAAGGTCACAGAGAGTGGTTGGCCGAAGTCAATTATCTTGGACAGTTTTCTCATCCTCATCTGGTGAGATTGATTGGTTATTGCCTTGAAGATGAACACCGCCTTCTTGCCTATGAGTTTATGCCCCGTGGAAGCTTGGAGAATCACTTGTTCAGGAGAGGATCATATTTTCAACCTCTTTCTTGGAGCTTGCGTCTGAAGGTTGCTATTGGCGCTGCCAAAGGGCTTGCGTTTCTGCACAGTGCTGAAAATAAAGTGATATATAGAGATTTCAAGACTTCAAATGTCTTGTTGGATTCGGATTATAATGCAAAGCTTTCTGATTTCGGGTTGGCAAAGGACGGTCCAACCGGTGAAAAAACTCATGTCTCCACCAGAGTGATGGGAACGTATGGATATGCAGCCCCTGAATATCTAGCCACAGGTCATCTTACTACTAAGAGTGATGTCTATAGTTTCGGAGTTGTCCTGCTTGAAATGTTATCCGTCGGCTCGAAGGGCAGTATTCAGCTGACGAGTCCTTCAAGGTTGCCACCCTTGCTGTACGATGCCTATCAACCGAATCCAGGAAATCAAAAGCGTTATCGGAGAAAAAGTGCTGATGATGTTAGCCATGCAAAGAATAACACATCGAAGAGTCACAATGCTTATCCGCGTATCACGTTGTCTCCTCTCTATACATGA 891 0.44 MGVCLSAQIKAETPYNTGLNSKNSASAGNDLSSSNSKVSAASVPQTPRSEAKPGTGIVIAVKRLNLEGFQGHREWLAEVNYLGQFSHPHLVRLIGYCLEDEHRLLAYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVAIGAAKGLAFLHSAENKVIYRDFKTSNVLLDSDYNAKLSDFGLAKDGPTGEKTHVSTRVMGTYGYAAPEYLATGHLTTKSDVYSFGVVLLEMLSVGSKGSIQLTSPSRLPPLLYDAYQPNPGNQKRYRRKSADDVSHAKNNTSKSHNAYPRITLSPLYT 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01100 296 Gene3D Transferase(Phosphotransferase) domain 1 110 290 - -
Vifa1g01100 296 MobiDBLite consensus disorder prediction 16 51 - -
Vifa1g01100 296 MobiDBLite consensus disorder prediction 278 296 - -
Vifa1g01100 296 MobiDBLite consensus disorder prediction 255 296 - -
Vifa1g01100 296 MobiDBLite consensus disorder prediction 16 49 - -
Vifa1g01100 296 Gene3D Phosphorylase Kinase; domain 1 20 109 - -
Vifa1g01100 296 ProSiteProfiles Protein kinase domain profile. 1 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01100 296 SUPERFAMILY Protein kinase-like (PK-like) 53 234 IPR011009 -
Vifa1g01100 296 Pfam Protein tyrosine and serine/threonine kinase 51 244 IPR001245 GO:0004672|GO:0006468
Vifa1g01100 296 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Vifa1g01100 296 PANTHER OS01G0588500 PROTEIN-RELATED 47 239 - -
Vifa1g01100 296 MobiDBLite consensus disorder prediction 263 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01100 Vifa-Chr1 180478071 180480404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01100 55 231 Glycoside Hydrolase AT3G07070 59.551 6.14e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa1g01100 PK_Tyr_Ser-Thr 8.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01100 - - gmx:100798404 389.808