Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01094 ATGTCTCTACCAAGGCTAGGAATAGGGGATGATGAAGTGGATAGTTCAGTTCCAAAGATTCAATCTTTTGAAGATGAGGCTGAAAGAAAGTTTAATCTTAAAGCTACTGAGCTTAGGCTGGGACTTCCTGGATCAGTGTCTCCTGAAAGGGATTCATCTGATCTTTGTTTGAGAAGTTTTGATGAAAAGCCTCTTTTTCCTTTGCATCCTCAAAAAGAGGAATCAAAGCCTGCTGTTTTAGGTAACAAAAGAGGGTTTTCTGATGCCATGAATGTTTTCTCAGAGGGGAAAATGAAGCCTGGCTCGAATATGCTTGAGAATGTTGCGGCGCTGCAAGGCAAAGGGAATGAAATAGCAACAGTTAAGGTTGGTTTTGAGAGGCCAAACGGTGTCGGTGAAAGCAGACCAAATCTTAATGGTTCTCCAAGTAATGGAAATAGCATTGCTCCAGCTACCAAGGCACAGGTTGTTGGTTGGCCTCCAATAAGATCATTTCGGAAAAATTCATTGACAACTGCATCAAAGAACACCGAAGAGAATTACACTGCATATTCAGAACTATCTTCTTCTCTTGAGAAGATGTTCAGCTGTTTCACCATAGGACAATGTGAATCTCATGGAAATCAGATGCTGAATGAAACAAAGCTGAGAGATCTGCTTCATGGGTCAGAATATGTTATTACTTATGAGGATAAAGATGGTGACTGGATGCTTGTCGGTGATGTTCCTTGGGAGATGTTTATTGATACATGCAGGAGACTAAGGATAATGAAAAGCTCCGAAGCGATTGGTCTAGCCCCTAGAGCAGTTGAAAAAAGTAAAAGCAGGAACTAG 834 0.4125 MSLPRLGIGDDEVDSSVPKIQSFEDEAERKFNLKATELRLGLPGSVSPERDSSDLCLRSFDEKPLFPLHPQKEESKPAVLGNKRGFSDAMNVFSEGKMKPGSNMLENVAALQGKGNEIATVKVGFERPNGVGESRPNLNGSPSNGNSIAPATKAQVVGWPPIRSFRKNSLTTASKNTEENYTAYSELSSSLEKMFSCFTIGQCESHGNQMLNETKLRDLLHGSEYVITYEDKDGDWMLVGDVPWEMFIDTCRRLRIMKSSEAIGLAPRAVEKSKSRN 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01094 277 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 32 175 IPR003311 GO:0005634|GO:0006355
Vifa1g01094 277 FunFam Auxin-responsive protein 170 269 - -
Vifa1g01094 277 Gene3D - 177 271 - -
Vifa1g01094 277 ProSiteProfiles PB1 domain profile. 159 259 IPR000270 GO:0005515
Vifa1g01094 277 Pfam AUX/IAA family 35 179 IPR033389 -
Vifa1g01094 277 Pfam AUX/IAA family 180 268 IPR033389 -
Vifa1g01094 277 SUPERFAMILY CAD & PB1 domains 183 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01094 Vifa-Chr1 178696652 178699164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01094 181 262 B3 DNA Binding Superfamily AT1G19220 31.707 8.06e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vifa1g01094 AUX_IAA 2.6e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01094 K14484 - gmx:100818881 353.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01094 1 178696652 178699164 Vifa1g01094 1 178696652 178699164 ECH
Vifa1g01094 1 178696652 178699164 Vifa4g01914 4 538693440 538695494 PCT