Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01081 ATGCTTTCTCCAAACTCCTTTCTGCAGGATTTCTGTGTTCCCAACACAGTAAATCCAGAAACAAATGGTTTTGAGTTGGAAGATTCACCATCATCTTCACCTTCTTCTGTCGCAACCTCAAATGGAGGAGGATCCTCAGAATCGACTAGATACTCCAATAACATCCTCAGATACATAAGTGACATACTCATGGATGAAGAAGATGAATTGATGCACAAACCCTGCATGTTGCAGGAATGTTTAAGACTTCAAGCTGCTGAAAAATCATTCTATGATGTTCTTGATCACAACAACCATCCTTCATCAAAGGATAGCACAAGCACTGCCCAAGATGGAAATTTCGGTCGCACTGCTAGTTTTGAGAGCAATAGTGGTGGCAGCTGCACCACTGATAACTCATATGAATCTGATTGGGTTAACCTTGTTGGAGAAATCGACTCTTCTTCGTTACAACTACAAACCCCTTTAGTAGAACAAAACTACTATGATTTGATAGAACCAGATCCAGCAAGCCATTTTCAAGATGGAACTTGGAGTTGGAATGACATTCAGACAGTGATTGCGGTTGAAGAGGCTTCGGCTTTGTTAGTAACAAGAGAAAAGAGAAGCCATACGATGGATGATGATGATGATAATTGTAATAATGAACAAGAGGGAAGGGGTAGCAAGCTTTCAGCTAACTTCTCTGGTGAATTAGAGCCACCAGAGATTTTAGATGAGGTACTACTTTATCAAACAGGAAGGTATCAACACCAACAAGCATCAAAGAATGTTGGTTCAGGAGGAAAGGCAACAGCAAGACGTCCGCGTTTGAAGAAAGGATCTACTGATAACACGGAGGCTGTGGATTTGTGGACCATGCTAACTCAATGTGCACAGGCAGTGGCGAGCTACGATCAAAGGAATACAAATGAGCTACTCAAGCAGATTAGGCAACACTCTTCGCCGTTCGGCGATGGACTCCAGCGTTTAGCTTATTACTTTGCTGATGGTCTTGAGATCAGATTGGCTGCCGAGACGCCATCGTATATGCCTATTAATGTGAAACAATTTTCAGCATAG 1062 0.4228 MLSPNSFLQDFCVPNTVNPETNGFELEDSPSSSPSSVATSNGGGSSESTRYSNNILRYISDILMDEEDELMHKPCMLQECLRLQAAEKSFYDVLDHNNHPSSKDSTSTAQDGNFGRTASFESNSGGSCTTDNSYESDWVNLVGEIDSSSLQLQTPLVEQNYYDLIEPDPASHFQDGTWSWNDIQTVIAVEEASALLVTREKRSHTMDDDDDNCNNEQEGRGSKLSANFSGELEPPEILDEVLLYQTGRYQHQQASKNVGSGGKATARRPRLKKGSTDNTEAVDLWTMLTQCAQAVASYDQRNTNELLKQIRQHSSPFGDGLQRLAYYFADGLEIRLAAETPSYMPINVKQFSA 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01081 353 ProSiteProfiles GRAS family profile. 275 353 IPR005202 -
Vifa1g01081 353 MobiDBLite consensus disorder prediction 253 276 - -
Vifa1g01081 353 MobiDBLite consensus disorder prediction 97 128 - -
Vifa1g01081 353 MobiDBLite consensus disorder prediction 100 128 - -
Vifa1g01081 353 MobiDBLite consensus disorder prediction 201 230 - -
Vifa1g01081 353 MobiDBLite consensus disorder prediction 18 50 - -
Vifa1g01081 353 Pfam GRAS domain family 286 344 IPR005202 -
Vifa1g01081 353 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 203 339 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01081 Vifa-Chr1 176997303 176998449 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01081 51 338 GRAS Transcription Factor Family AT2G29060 32.468 8.72e-27 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa1g01081 GRAS 1.2e-12 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01081 - - cam:101504630 457.988