Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01080 ATGCCTGGTGGCCCTGCAAAGCTACGAATTACGGGAATTGAGATTCCTCAGCCAGGATTTAGACCTGCAGAATGGGTGGAGGAAACAGGACGGCGTTTAGAAAAATACTGCAAGAAGTTTAATGTTCCATTTGAATACAATTGCATTGCACAGAAATGGGACACTATCCGGCTTGAGGATCTACAGATAGACAGGAATGAAATAACTTTTGTTAGCTGTTTGTACAGACTGAAAAATTTGCCTGATGAAACTGTGGCAGTGAATTGTCCAAGAGAAGCTGTGTTGAAGTTGGTCAGGAAGATTAATCCAAAAATCTTCTTCCATGGAGTTGTAAATGGAAGTTATAGTGCACCGTTTTTCCTGACTCGGTTTAGGGAAGCACTCTACCACTTCTCATCGTTGTTTGATATGTTTGAGGCTAACGTGCCTCGCGAAGACACGCAAAGGTTGACGCTTGAGAAAGGGTTGTTTGGGAGGGATGCTATAAATGTAATAGCTTGTGAGGGTGCAGAGAGAGTTGAAAGGCCTGAGACCTACAAGCAATGGCAGATCAGGAACAGGAGAGCTGGATTCAAGCAAATCAGGTTGGATACTAAATTAGTGAATGAAACCAAAGCAATGTTGAAGAGGGAATACCATAAAGATTTTGTGGTTGATGAGGATGGCAAGTGGGTTTTGCAGGGATGGAAAGGGCGTATTTTGAATGCTTTTTCTGCTTGGGTTCCTGCTTAA 732 0.429 MPGGPAKLRITGIEIPQPGFRPAEWVEETGRRLEKYCKKFNVPFEYNCIAQKWDTIRLEDLQIDRNEITFVSCLYRLKNLPDETVAVNCPREAVLKLVRKINPKIFFHGVVNGSYSAPFFLTRFREALYHFSSLFDMFEANVPREDTQRLTLEKGLFGRDAINVIACEGAERVERPETYKQWQIRNRRAGFKQIRLDTKLVNETKAMLKREYHKDFVVDEDGKWVLQGWKGRILNAFSAWVPA 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01080 243 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 234 IPR005202 -
Vifa1g01080 243 ProSiteProfiles GRAS family profile. 1 241 IPR005202 -
Vifa1g01080 243 Pfam GRAS domain family 2 240 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01080 Vifa-Chr1 176996485 176997216 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01080 3 242 GRAS Transcription Factor Family AT2G29060 60.996 1.55e-105 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa1g01080 GRAS 2.4e-67 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01080 - - cam:101504630 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00760 6 269934408 269936657 Vifa1g01080 1 176996485 176997216 PCT