Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01079 ATGCTTTCTTCAAATACCTTTTTGCCAGATTTTTGTGTTCCTAATACAGTAAACCAAGAAACAGATGGTTTTGAGTTGGAAGGTTCAACATCTTCACCTTCATCTTTCACAAGCTCAAATGAAGAATCCTCAGAAGGTTCAAGATATTCCAATAACTTCCTGAGATACATAACTGACATCCTCATGGATGAAGAAGATGAATTAGAGCGTCAACCCTGCATGTTGCAGGAATGTTTAAGACTCCAAGCTGCTGAAAAATCATTTTATGATGTTCTTGGCCATAGATATCCTAATTCATCATGTGACGATACCTCTGACCCGGATGGAAATTATGGCCGTACTGTTAGTTTTGAGAGCAATAGCAGCAGCTGCACCACTGATAACACGTATGAATCTGATTGGGTCAATCTTGTTGGAGAAATTGAGTCTTCTTCTTTACCACTACAAACCCCTTTAGTAGAACAAAACTACTGTGAGGTGACAGAGCCTGATCCAGTTGTCATTGAGTCACAAGCTGCTAATTATTTTCATACTGGAACTAGGAGTTGGAATGATATTCAACCAGTGATGGTTGCCGAGGTTTCAGCTTCATTGGTACCAAGAGAAAAGAGAAGTCATAAGACAGATGATAATGATGATACTTGTAATGAAGAAGATGGAAGAGGTAGCAAGGTTTCAGCTATCTTCTCTGATGAGTTAGAGCCACCAGAGATATTAGATGAGGTACTGCTGCTTTGTCAGACAGGAAGGACTCAAAACCAACAAGCATCACAAGATGTTGACTCAGTAGGAAAGTCAAAGGCAACTAGTTCGCGTTCAAAGAAAGTATCTAGAAATAACAATGCCACAGCTGTGGATTTGGGGACCATGCTAACTCAATGTGCACAGGCTGTAGCGAACTATGATCAAAGGAATACAAATGAGCTTCTCAATCAGATTAGGCATCATTCTACGCCATTTGGGGATGGGCTCCAGCGTTTAGCTCATTACTTTGCTAATGGTCTTGAGATCAGATTCGCTGCCGAGACGCCTTCTTATAAGGCGCTTGATATGGCAACTGCTGGAGATATGTTGAAAGCTTATAAACTATTTGTTACCTCGTCTCCATTGCAGAGAATGACAAATTTGTTATTAACCAAAACGATTCTCAGTGTAGTGAAGAATGAGAGCAGCATTCATATTATTGACTTTGGAATTAGCTATGGTTTTCAGTGGCCATGCCTTATCAAAACACTTTCATCACGACATGGCGGTCCTCCAAAGCTTCGCATTACAGGAATTGACCTTCCTCAGCCAGGATTAAGGCCTGCAGAGAGGGTGGAGGAAACCGGACGGCGGTTAGGAAACTTCTGCAAGAAGTTCAATGTCCCGTTTGAATACAACTGCATTGCACAGAAATGGGAAACTATCCGGCTCGAGGATCTAAAGATAGACAGGAACGAAATAACTCTTGTAAGCTCTTTGTACAGACTGAAAAACCTTCCTGATGAAACTGTTGGAGTGAATTGTCCAAGAGATACTGTGTTGAAGTTGATCAAAAAGATTAATCCAAAAATCTTCTTCCATGGAGTTGTCAACGGAAGTTATAGTGCACCGTTTTTCCTGACTCGGTTTAAGGAAGCACTATACCATTTCTCATCATTGTTTGATATGTTTGAGGCTAACGTGCCTCGCGAAGACACACAAAGGATGATGCTTGAGAAAGGGTTGTTTGGAAGGGATGCTATAAATGTTATAGCTTGTGAGGGTGCAGAGAGAGTTGAAAGGCCTGAGACCTACAAGCAATGGAAGATCAGGAACAGGAGAGCCGGGTTCAAGCAAATCAGGTTGGATTCTAAGTTAGTGAATGAAACCAAAGCAATGTTGAAGAGGGAATACCATAAAGATTTTGTAGTTGATGAGGATGGTAAGTGGGTTTTGCAGGGATGGAAAGGGCGAATTTTGAATGCTTTTTCTGCTTGGGTTCCTGTTTAA 1974 0.4124 MLSSNTFLPDFCVPNTVNQETDGFELEGSTSSPSSFTSSNEESSEGSRYSNNFLRYITDILMDEEDELERQPCMLQECLRLQAAEKSFYDVLGHRYPNSSCDDTSDPDGNYGRTVSFESNSSSCTTDNTYESDWVNLVGEIESSSLPLQTPLVEQNYCEVTEPDPVVIESQAANYFHTGTRSWNDIQPVMVAEVSASLVPREKRSHKTDDNDDTCNEEDGRGSKVSAIFSDELEPPEILDEVLLLCQTGRTQNQQASQDVDSVGKSKATSSRSKKVSRNNNATAVDLGTMLTQCAQAVANYDQRNTNELLNQIRHHSTPFGDGLQRLAHYFANGLEIRFAAETPSYKALDMATAGDMLKAYKLFVTSSPLQRMTNLLLTKTILSVVKNESSIHIIDFGISYGFQWPCLIKTLSSRHGGPPKLRITGIDLPQPGLRPAERVEETGRRLGNFCKKFNVPFEYNCIAQKWETIRLEDLKIDRNEITLVSSLYRLKNLPDETVGVNCPRDTVLKLIKKINPKIFFHGVVNGSYSAPFFLTRFKEALYHFSSLFDMFEANVPREDTQRMMLEKGLFGRDAINVIACEGAERVERPETYKQWKIRNRRAGFKQIRLDSKLVNETKAMLKREYHKDFVVDEDGKWVLQGWKGRILNAFSAWVPV 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01079 657 MobiDBLite consensus disorder prediction 200 220 - -
Vifa1g01079 657 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 241 648 IPR005202 -
Vifa1g01079 657 MobiDBLite consensus disorder prediction 200 224 - -
Vifa1g01079 657 Pfam GRAS domain family 289 654 IPR005202 -
Vifa1g01079 657 MobiDBLite consensus disorder prediction 22 47 - -
Vifa1g01079 657 MobiDBLite consensus disorder prediction 254 281 - -
Vifa1g01079 657 ProSiteProfiles GRAS family profile. 278 655 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01079 Vifa-Chr1 176992332 176994305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01079 28 657 GRAS Transcription Factor Family AT2G29060 42.121 7.16e-167 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa1g01079 GRAS 1.8e-109 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01079 - - cam:101504630 1010.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01079 1 176992332 176994305 Vifa1g01079 1 176992332 176994305 ECH