Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01068 ATGAACTCGGATACGCTTCCCTCCTCCACGGCGTCGTTTTGGTGCTATAGTTGCACACGTTTCGTTCACCTTTTGGATCACAACGACGTCGTTTGTCCCCACTGCACAAGCGGCTTCGTTGAAGAGATTCACGCCGGTAACTCTCCGGCTGTTTCCTTATTCGCCGACGGAATTCATTCTTCGAGGAGACAAACCTCCCGCCGGAGACGACGTAACGCTGGCAACAGATCACCGTTCAATCCTGTAATCGTGCTTCGCGGACCTAGGGAGGTCAACGGTGGTGGCGGTGGCGGTGTTGAAAGTGAGGGGAGTAGCTTTGAATTGTATTATGAAGACGGCAACGGCGCCGATCTACGTCCGCTTCCGCCGAATATGTCGGAGTTATTGCTTGGTTCTGGTTTTGATCGCTTGCTTGAGCAATTCTCTCAGATCGAAATCAACGGTTTTGGTAGGGCGGAGAATCCACCAGCGTCAAAGACGGCGATAGAGTCAATACCAACCGTCGATATCACCTATGCTGAGGTAGAAGAAGAAACGCACTGTGCGGTTTGCAAAGAAGCATTCGAGCTTGGTTCGGAGGCGCGTAAGATGCCGTGCAAGCACCTTTACCATTCCGATTGCATTCTCCCATGGCTCTCAATGCGAAATTCGTGTCCGGTCTGCCGCCACGAGTTACCTCCCGATCAAAACCCCTCGGAGACTAGACTATCCGGTCAGACCGGTCAGACCGACGAAGAAGCGGTGGGATTGACGATATGGAGATTACCAGGAGGTGGATTCGCCGTCGGGAGATTCAGCGGTGGTCGGAGAGCCGGTGAGATTCAGTTACCGGTTGTTTACACAGAGATGGACGGCGGTAATAACTCAAGCGAAGATTCTAGAAGCGACTCTTTGGCAGTTGGAAGCAATAGAGTTAGAGAGAGACGTGGATTTCGAAGAATTATTCGGAATTTTTTATCCTTTTTTGGTTACGCTAATTTAAACCGCACCGTTTCTGGTTCTGGTTCATTTTTTAGTAGAAGTTCACGGAGAGGAAGCAGAACTTGGGTCACGGAATAA 1059 0.5061 MNSDTLPSSTASFWCYSCTRFVHLLDHNDVVCPHCTSGFVEEIHAGNSPAVSLFADGIHSSRRQTSRRRRRNAGNRSPFNPVIVLRGPREVNGGGGGGVESEGSSFELYYEDGNGADLRPLPPNMSELLLGSGFDRLLEQFSQIEINGFGRAENPPASKTAIESIPTVDITYAEVEEETHCAVCKEAFELGSEARKMPCKHLYHSDCILPWLSMRNSCPVCRHELPPDQNPSETRLSGQTGQTDEEAVGLTIWRLPGGGFAVGRFSGGRRAGEIQLPVVYTEMDGGNNSSEDSRSDSLAVGSNRVRERRGFRRIIRNFLSFFGYANLNRTVSGSGSFFSRSSRRGSRTWVTE 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01068 352 MobiDBLite consensus disorder prediction 283 300 - -
Vifa1g01068 352 Pfam Protein of unknown function (DUF1117) 248 334 IPR010543 -
Vifa1g01068 352 SMART ring_2 181 221 IPR001841 -
Vifa1g01068 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 228 IPR013083 -
Vifa1g01068 352 Pfam Ring finger domain 180 222 IPR001841 -
Vifa1g01068 352 ProSiteProfiles Zinc finger RING-type profile. 181 222 IPR001841 -
Vifa1g01068 352 SUPERFAMILY RING/U-box 161 228 - -
Vifa1g01068 352 FunFam E3 ubiquitin-protein ligase RING1-like 143 228 - -
Vifa1g01068 352 CDD RING-H2_RNF126-like 181 222 - -
Vifa1g01068 352 MobiDBLite consensus disorder prediction 224 243 - -
Vifa1g01068 352 Pfam zinc-ribbon 12 43 IPR039525 GO:0061630
Vifa1g01068 352 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 59 226 - -
Vifa1g01068 352 MobiDBLite consensus disorder prediction 60 79 - -
Vifa1g01068 352 MobiDBLite consensus disorder prediction 283 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01068 Vifa-Chr1 175530020 175531078 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01068 117 233 C3H Transcription Factor Family AT5G01980 44.444 8.32e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01068 K11982 - gmx:100804867 406.757