Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01062 ATGGAAGAGGTCATGAATTTTATGATGCATGCTTTTGAATTGGCCAAAAATCTTGAACTAGAATTACCCAACATGGCCAACAACCCTGAAATTCTATTCTCATCCATTCATGAGGTTGAAAAAGCTTATAGTGATGCCAAAGAAAGAATTAGGATGGTGTTTTCATCATCATCAGCACAACATGAAACAACAACAACAACAACAAAAGGTTTTGGTTCCTTGGCTCAGATTCTGTCTCATGATGTTTTCATGCAGAAAAACCAGCATGCTCCAATGGGTGGAAGTGTATCTTCCATGCATGCACATTCAATGGATCAATCGCTTCTAATGCAACACTCTTTCGATGTGAGTGTTTTTCTCGAGAATAAGATGATAAATGGTAGTGGTGATGCTCATCTTTTAAGATCAAAAGGGTTACAAGGAATAGAAGCTCCACCATCACGACCTAAAAAAAGGAAGAATGATTTGGAGAAGAGAACTGAAATGTTTCCAGCACCTCAAATTGGAAACACTGAAATGCCACCAGAAGACGGTTTCACTTGGAGAAAATATGGCCAGAAAGAGATACTTGGCCGCAAGTACCCAAGAAGTTACTATAGGTGCACACACCAAAAATTATACCATTGTCCAGCCAAGAAGCAAGTACAAAGGCTGGATGATAACCCTAACATAGTCGAAGTAACATATAGAGGTGAACACATTTGTCACAAATCCTTAACAGCACCATCATCATATCCACCACTACCAACCCTTCTTGCAAACACTAGTACTACTACTCAAACTACCGTTTCTTCCGAGAGGTGGCCGCTCGCGGTGAATCTAGACCTCGGGGGCGGAGATGGTAGCGGTGGCGGAGTCTCTAATTCAAGATTCGGCGTTGAATACGCGGTGGCCGATATGGCGGATGCAATGTTCAATTCAGGAAGTAGTAGTGGAAATAGTATGGAGTTACTCTTTCAACCAAGTGAAGATAAATGGGAGCATGATGAAAAGGAAGATTGA 1002 0.4142 MEEVMNFMMHAFELAKNLELELPNMANNPEILFSSIHEVEKAYSDAKERIRMVFSSSSAQHETTTTTTKGFGSLAQILSHDVFMQKNQHAPMGGSVSSMHAHSMDQSLLMQHSFDVSVFLENKMINGSGDAHLLRSKGLQGIEAPPSRPKKRKNDLEKRTEMFPAPQIGNTEMPPEDGFTWRKYGQKEILGRKYPRSYYRCTHQKLYHCPAKKQVQRLDDNPNIVEVTYRGEHICHKSLTAPSSYPPLPTLLANTSTTTQTTVSSERWPLAVNLDLGGGDGSGGGVSNSRFGVEYAVADMADAMFNSGSSSGNSMELLFQPSEDKWEHDEKED 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01062 333 SUPERFAMILY WRKY DNA-binding domain 172 236 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g01062 333 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 60 255 IPR044810 GO:0003700
Vifa1g01062 333 MobiDBLite consensus disorder prediction 311 333 - -
Vifa1g01062 333 MobiDBLite consensus disorder prediction 137 157 - -
Vifa1g01062 333 Gene3D WRKY domain 165 238 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g01062 333 ProSiteProfiles WRKY domain profile. 176 233 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g01062 333 SMART WRKY_cls 175 237 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g01062 333 Pfam WRKY DNA -binding domain 176 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01062 Vifa-Chr1 174994381 174995652 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01062 1 324 WRKY Transcription Factor Family AT2G40740 37.500 2.01e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa1g01062 WRKY 6.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01062 - - mtr:11424132 457.218