Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01061 ATGGAAGAGGTCATGAATTTTATGATGCATGCTTTTGAATTGGCCAAAAATCTTGAACTAGAATTACCCAACATGGCCAACAACCCTGAAATTCTATTCTCATCCATTCATGAGGTTGAAAAAGCTTATAGTGATGCCAAAGAAAGAATTAGGATGGTGTTTTCATCATCATCAGCACAACATGAAACAACAACAACAACAACAAAAGGTTTTGGTTCCTTGGCTCAGATTCTGTCTCATGATGTTTTCATGCAGAAAAACCAGCATGCTCCAATGGGTGGAAGTGTATCTTCCATGCATGCACATTCAATGGATCAATCGCTTCTAATGCAACACTCTTTCGATGTGAGTGTTTTTCTCGAGAATAAGATGATAAATGGTAGTGGTGATGCTCATCTTTTAAGATCAAAAGGGTTACAAGGAATAGAAGCTCCACCATCACGACCTAAAAAAAGTAGGAAGAATGATTTGGAGAAGAGAACTGAAATGTTTCCAGCACCTCAAATTGGAAACACTGAAATGCCACCAGAAGACGGTTTCACTTGGAGAAAATATGGCCAGAAAGAGATACTTGGCCGCAAGTACCCAAGAAGTTACTATAGGTGCACACACCAAAAATTATACCATTGTCCAGCCAAGAAGCAAGTACAAAGGCTGGATGATAACCCTAACATAGTCGAAGTAACATATAGAGGTGAACACATTTGTCACAAATCCTTAACAGCACCATCATCATATCCACCACTACCAACCCTTCTTGCAAACACTAGTACTACTACTCAAACTACCGTTTCTTCCGAGAGGTGGCCGCTCGCGGTGAATCTAGACCTCGGGGGCGGAGATGGTAGCGGTGGCGGAGTCTCTAATTCAAGATTCGGCGTTGAATACGCGGTGGCCGATATGGCGGATGCAATGTTCAATTCAGGAAGTAGTAGTGGAAATAGTATGGAGTTACTCTTTCAACCAAGTGAAGATAAATGGGAGCATGATGAAAAGGAAGATTGA 1005 0.4139 MEEVMNFMMHAFELAKNLELELPNMANNPEILFSSIHEVEKAYSDAKERIRMVFSSSSAQHETTTTTTKGFGSLAQILSHDVFMQKNQHAPMGGSVSSMHAHSMDQSLLMQHSFDVSVFLENKMINGSGDAHLLRSKGLQGIEAPPSRPKKSRKNDLEKRTEMFPAPQIGNTEMPPEDGFTWRKYGQKEILGRKYPRSYYRCTHQKLYHCPAKKQVQRLDDNPNIVEVTYRGEHICHKSLTAPSSYPPLPTLLANTSTTTQTTVSSERWPLAVNLDLGGGDGSGGGVSNSRFGVEYAVADMADAMFNSGSSSGNSMELLFQPSEDKWEHDEKED 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01061 334 Gene3D WRKY domain 166 239 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g01061 334 ProSiteProfiles WRKY domain profile. 177 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g01061 334 MobiDBLite consensus disorder prediction 312 334 - -
Vifa1g01061 334 MobiDBLite consensus disorder prediction 138 157 - -
Vifa1g01061 334 SMART WRKY_cls 176 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g01061 334 Pfam WRKY DNA -binding domain 177 236 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g01061 334 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 60 256 IPR044810 GO:0003700
Vifa1g01061 334 SUPERFAMILY WRKY DNA-binding domain 173 237 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01061 Vifa-Chr1 174994381 174995652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01061 1 325 WRKY Transcription Factor Family AT2G40740 36.810 9.03e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa1g01061 WRKY 6.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01061 - - mtr:11424132 459.144