Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01060 ATGGATAATAATATCTCTCAAAGTGTGAGAAAGAGATTAATAATCAAAGAGCTTGTAAAAGGTCAAGAAGCTGCAAACAAACTCAGATTTCTTCTTCAAAATGACAAGTACCCCTTTGGTTGTGATGATGTAGGCGCCGGCATTGATCCACCATCTGGAGATGCAGGTAACGTTGTTAAAAAGAGTTCAAGAGGTTGCTACAAAAGAAGGAAGTGTGGTGAGACATGGAGCATAGTTTCCGAAACCATTGTTGATAATCATTCATGGAGAAAGAGTTACTTCAGGTGCGCATTTAAGTATGATCAAGGTTGTTTAGCAATCAAACAGGTTAACCACCACATTACTTCACCAACTCCAAGCATAATTATAAAGCAAGAAGATCCTTTTGAAGAGAATACTGCAAGTAATGTTACAGATAAACAAAAGCAAGAATTAATGGATTCTGATGATATTGCAGATGCTGTGTTGGTGTTTCAAAGTCTGGGAATGGAGTTTGGGGACATTGACTTTCACTTTGATTAA 522 0.3736 MDNNISQSVRKRLIIKELVKGQEAANKLRFLLQNDKYPFGCDDVGAGIDPPSGDAGNVVKKSSRGCYKRRKCGETWSIVSETIVDNHSWRKSYFRCAFKYDQGCLAIKQVNHHITSPTPSIIIKQEDPFEENTASNVTDKQKQELMDSDDIADAVLVFQSLGMEFGDIDFHFD 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01060 173 Pfam WRKY DNA -binding domain 76 115 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g01060 173 SUPERFAMILY WRKY DNA-binding domain 76 120 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g01060 173 SMART WRKY_cls 83 125 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01060 Vifa-Chr1 174357944 174377687 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01060 41 110 WRKY Transcription Factor Family AT3G56400 44.706 1.76e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa1g01060 WRKY 6e-05 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01060 - - psat:127118629 178.718