Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01059 ATGGATAATAATATCTCTCAAAGTGTGAGAAAGAGATTAATAATCAAAGAGCTTGTAAAAGGTCAAGAAGCTGCAAACAAACTCAGATTTCTTCTTCAAAATGACAAGTACCCCTTTGGTTGTGATGATGTAGGCGCCGGCATTGATCCACCATCTGGAGATGCAGGTAACGTTGTTAAAAAGAGTTCAAGAGGTTGCTACAAAAGAAGGAAGTGTGGTGAGACATGGAGCATAGTTTCCGAAACCATTGTTGATAATCATTCATGGAGAAAGTATGGACAGAAGGGAATCATGAACTCTGAATATCCCAGGAGTTACTTCAGGTGCGCATTTAAGTATGATCAAGGTTGTTTAGCAATCAAACAGGTTAACCACCACATTACTTCACCAACTCCAAGCATAATTATAAAGCAAGAAGATCCTTTTGAAGAGAATACTGCAAGTAATGTTACAGATAAACAAAAGCAAGAATTAATGGATTCTGATGATATTGCAGATGCTGTGTTGGTGTTTCAAAGTCTGGGAATGGAGTTTGGGGACATTGACTTTCACTTTGATTAA 561 0.3779 MDNNISQSVRKRLIIKELVKGQEAANKLRFLLQNDKYPFGCDDVGAGIDPPSGDAGNVVKKSSRGCYKRRKCGETWSIVSETIVDNHSWRKYGQKGIMNSEYPRSYFRCAFKYDQGCLAIKQVNHHITSPTPSIIIKQEDPFEENTASNVTDKQKQELMDSDDIADAVLVFQSLGMEFGDIDFHFD 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01059 186 SUPERFAMILY WRKY DNA-binding domain 81 133 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g01059 186 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 62 134 IPR044810 GO:0003700
Vifa1g01059 186 ProSiteProfiles WRKY domain profile. 85 135 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g01059 186 Gene3D WRKY domain 60 136 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g01059 186 SMART WRKY_cls 83 138 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g01059 186 Pfam WRKY DNA -binding domain 85 128 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01059 Vifa-Chr1 174357944 174377687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01059 41 123 WRKY Transcription Factor Family AT3G56400 54.118 5.73e-22 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa1g01059 WRKY 1.1e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01059 - - psat:127118629 215.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01059 1 174357944 174377687 Vifa1g01059 1 174357944 174377687 ECH
Vifa1g01059 1 174357944 174377687 Vifa2g03019 2 859837126 859838576 PCT