Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01057 ATGGAACCACATCCGAATGCATTCTCCTCTATGCTTCGAATCAGGAGCATTCCTTATTCCTGTCATCCTCAACCATTGCTGGCTCTTAGCACGAGGATTCTGTCTTCTTCGCCGTCAACGTCTTCTTCTGAAACAAGAATTTGTTACTCTTCTACAAACCCTAAATCCTCATTCAATAACCTTTCTCTATTCTCCGACAACCACACTCTTCAAACCATGACGATTTCCAAGTGTTTCCCTCACTCTGGATCCGCCAATGCTATCCAGGTTTCTGAATCTGATTCTGTAGTAGATTCTCTTGTTGTGGTTTCGTTCTACAAGTTCGCGGATTTCGCCGATCATGCTATTTTGCGTGTTCCTTTGAAGCAGCTGTGTCAGGAATTGCGTGTTTCAGGTGGTATCATTCTAGCGCCCGAGGGAATAAATGGAAGCCTATGCGGCACGCAGCAGTCGGTTGAGAAAGTTCTTGCATTTATTCAGAGTGATGAGCGCCTGAAGGGACTAAGACGTATTGAATCGCCTGTTAGCCCTGAGGAGGAGGCCATACATCACGGTCATAATGACGGGCACAGTTCCAGTTCTCCTCTTGCTGCTGGAGAGGATGTGCCTTTTCGATGGGATCATGTGAGAGTCAAGGTGAAGAAAGAGATCGTTTCTCTTGGGATGCCTACTGTATCACCTATTGAAAGGGTTGGAAAATATGTTGGCCCAAAGGAATGGAATTCTCTGATTAGTGATCCTGATACAGTTGTAATTGATGTGCGAAATAACTACGAAACCAGAATAGGAAAGTTTAAAGGAGCTGTTGATCCCTGCACGACATCATTTCGCGAATTCCCGTCATGGGTGGAGGAACGTTTCGAGCTCATGAGAACAGATGCTGAGTATCCAAAAGTTGATGTAAACCATTCAGACCAAAGTGCTGAAAAAGAAACAGAGAGTACAAAACAACAGTTGCCGCGTATTGCAATGTATTGCACTGGGGGTATTCGATGTGAGAAAGCTTCAAGTCTACTTCTCAGCCAAGGTTTCAAAGAGGTCTATCACCTAGAAGGTGGAATTCTGAAATATCTTGAAGAGATTCCAGAGAAACAAAGTCTCTGGGAGGGAGAGTGCTTTGTGTTCGACAAACGAGTCTCGGTCGAGCATGGTTTGGCACAAGGAAATTTCAAGCTCTGTTATGGTTGTAAGCAGCCTGTGAGTGATGCAGACATGGAATCCCCAGAATATGAATATGGAGTCTCTTGTCCTTACTGTTTTGCACAGAAGTCAGAAGAAGAGAAGGAGAGGGCTCGAGCTCGTCAAAAACAATTTCAAAGATGGGGGATCATAGGTGGTCCGGATAAGGGCCGTCGGCCAAAACAGGAACCAGATGTTGCTAGCAGTGATCAAAATCAACTTTCAAAATCTATTTAA 1416 0.4463 MEPHPNAFSSMLRIRSIPYSCHPQPLLALSTRILSSSPSTSSSETRICYSSTNPKSSFNNLSLFSDNHTLQTMTISKCFPHSGSANAIQVSESDSVVDSLVVVSFYKFADFADHAILRVPLKQLCQELRVSGGIILAPEGINGSLCGTQQSVEKVLAFIQSDERLKGLRRIESPVSPEEEAIHHGHNDGHSSSSPLAAGEDVPFRWDHVRVKVKKEIVSLGMPTVSPIERVGKYVGPKEWNSLISDPDTVVIDVRNNYETRIGKFKGAVDPCTTSFREFPSWVEERFELMRTDAEYPKVDVNHSDQSAEKETESTKQQLPRIAMYCTGGIRCEKASSLLLSQGFKEVYHLEGGILKYLEEIPEKQSLWEGECFVFDKRVSVEHGLAQGNFKLCYGCKQPVSDADMESPEYEYGVSCPYCFAQKSEEEKERARARQKQFQRWGIIGGPDKGRRPKQEPDVASSDQNQLSKSI 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01057 471 Gene3D - 219 401 IPR036873 -
Vifa1g01057 471 Hamap tRNA uridine(34) hydroxylase [trhO]. 98 403 IPR020936 -
Vifa1g01057 471 Pfam UPF0176 acylphosphatase like domain 101 217 IPR040503 -
Vifa1g01057 471 MobiDBLite consensus disorder prediction 176 197 - -
Vifa1g01057 471 CDD RHOD_YceA 232 359 - -
Vifa1g01057 471 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 97 439 IPR020936 -
Vifa1g01057 471 Gene3D - 88 218 - -
Vifa1g01057 471 Pfam Rhodanese-like domain 238 359 IPR001763 -
Vifa1g01057 471 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 214 391 IPR036873 -
Vifa1g01057 471 ProSiteProfiles Rhodanese domain profile. 245 366 IPR001763 -
Vifa1g01057 471 SMART rhod_4 235 363 IPR001763 -
Vifa1g01057 471 MobiDBLite consensus disorder prediction 430 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01057 Vifa-Chr1 174147932 174150744 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01057 94 458 Sulfurtransferasese or Rhodanese AT2G40760 75.269 0.0 584
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01057 - - psat:127118628 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01057 1 174147932 174150744 Vifa1g01057 1 174147932 174150744 ECH