Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g01053 | ATGAAACTTTACTCCTCTCTTCTCTTCTTCTCTTCCTTCTTCCATTTCTACACTCTTTCTTCTGCACTCAACTCAGATGGCTTAGCACTCTTATCATTCAAATCTCACTGGACATCACTTCCACCTCTCATAAACTCAACATGGGTTCCTTCTCATTCAACACCATGCTCATGGGCTGGTCTCAAATGCAACTCTTTCCACCGTGTAATCTCTCTCAACCTTTCTTATCTTGATATCTACGGTCCACTAGGACCAGAAATTGCAAACTGCACACACCTTCAACACATAGATCTTAGTTACAACTACTTCAATGGCCAAATACCTCACTCTTTCGCTAACCTTCACAAACTCAAATATCTCAGTCTTGCTGTTAATCTTCTCAACGCTCCGTTTCCTCATTTCTTGTCTCAAATCCCTCACCTCAAGCTTCTTGATCTCTCTTATAACCAACTTCACGGTTCCATTTCAACTAGTGTTACCAACATGACTCATCTTCAAGACTTCTATCTCCAATTTAACAACTTCTCTCGTGCAATTCCTTCATCTATTGGGAACTGTACTAAGTTACAAGACTTGTATTTGAATGATAATCAGTTGGAGGTTGTTCTTCCTTACACTCTCAACAATCTCAATCATCTTCTTAACTTTGATGTTGCCAACAATAAACTAACAGGTACTATTCCATTGAGTTTTTCTGGTTGTAGAAATTTACAGTTTTTGGATATTTCGTTCAATGATTTTGGTAGTGCCATTCCATATAGCATTGGTAATTGTACTGCTTTATCACAATTTGCTGCTGTGAATTCTAACTTGGTTGGAGCTATTCCATCTTCCATTGGTCTGCTCACCAAGCTTTCGATTCTACGCCTTTCGGAGAATCATTTGTCTGGAAAGATACCTTCTGAAATAGGTACCTGCAGGTCTTTGAATGAGTTGCACTTGTATTCCAATCGACTTGATGGAAAGATTCCAAAAGAATTGGGAAAACTCAGTGAATTAAGGGACCTTGAACTGTTTTCTAATCAATTGAGTGGCGAAATTCCGCTTGATATATGGAAGATTCGAAGTCTCGAGCATCTGTTTGTGTATAATAATAGCCTTTCTGGTGAACTTCCTGTGGAGATGACAGAGCTCAAGAACCTTAAGAACATTTCATTGTTTAACAACATGTTCTCTGGGGTTATACCTCAAAGCTTGGGAATTAACAGCAGTTTGGTACAGTTGGACTTTGTGAATAACAGGTTCACTGGGAACCTCCCACCAAATCTTTGTTTTGGAAGAAAGCTGAGTGTTTTGAATATGGGAATCAATCGATTTCGAGGAAGAATACCTCCTGATGTTGGAAGATGCCCAACTCTAAGAAGGGTCATTCTTAAACAAAACAAATTTACCGAGCCTCTTCCTGATTTTGAAAGGAACACCAATCTAGTATTCATGGAGATCAGCAACAACGAAATCAATGGATCAATTCCGTCGAGCTTAGGAAACTGCACAAATCTCACTGATTTAATGTTGTCCATGAACAAATTTAGTGGGCGTATACCACCAGAGTTAGGAAGCCTTGTGAATCTTCGGACGCTGGATCTTGCTCACAATAACTTAGAAGGTCCTTTGCCTTTTCAGCTCTCAAACTGTACCAAAATGGACAAGTTTGATGCGGGATTTAATTTCCTGAATGGTTCATTGCCGTCGAGTTTGCAGAAGTGGACAAGGCTAAACACACTAATTTTGAATGAGAATCGTTTTAGTGGCGGCATTCCAGAGTTCTTGTTGGCTTTTAAAGATCTTTCTGAACTACAGCTTGGTGGCAATATGTTTGGAGGAAAAATTCCTGCCTCGGTTGGGACATTGCAGAATTTGATCTACGGGTTGAATCTAAGTTCTAATGGGCTGATAGGAGACATTCCTGTGGAAATTGGAAAGCTGAAAACTCTACAAATGATGGATCTTTCTCGGAACAATTTGACAGGAAGCATACAAGTTCTTGATGAACTCCTTTCGTTAGTTGAAATCAATCTTTTGAACAATTCTTTTCAGGGTCCCATACCAAAGATGCTAATGAAGCAGTTTAATTCTCGCATGTCTTCATTTTCGGGGAATCCCGGGCTATGTATCAGTTGTTCAGCATCCAGTGGCTTGGTTTGCAAGGAAAGCAGCTATGTAAAACCATGTGACAGCAACAAACCTATGAATAACAAAGGCCCAAGTAAAATTGCAATTGTGATGATAGCTATAGGATCCTCAATATTTGTTGTTTTGCTGTTGATGGGATTAGTTTATATCTTTGCTTATGGCAGAAAATCTAAGCAGCAAGTCCATATCACCGATAACGGAGGTCCTTCGTCCCTTCTTAACAAAGTCATGGAGGCTACATCGAACCTAAGTGAACGGTACATTATTGGCAGAGGAGCCCATGGAGTTGTCTATAAAGCCCTTGTAAGTCAAGACAAAGCTTTTGCTGTAAAGAAGCTAGCATTTGCTGCCAGCAAAGGTAAGAACTTGAGCATGGTTAGAGAAATTCAAACCCTTGGACAAATTAGGCATCGAAATCTTGTCAAATTGGAAAACTTTTGGTTGCGACAAGATTATGGTCTAATTTTGTATAGCTACATGCCAAATGGAAGCCTTTATGATGTCTTGCATGAAAAGAAACCAGCACCGTCTTTAGAGTGGAATGTCCGGTATAAGATAGCTTTTGGAATTGCTCATGGGTTGGCTTACCTCCATTATGATTGCGATCCTCCCATAGTGCACCGAGATATCAAACCAAACAATATACTTCTAGACTCTGATATGGAGCCTCACATTGCAGACTTTGGTATTGCCAAACTTTTGGACCAGTCCTCTACATCGAATCCTTCGTTATCTGTGCCTGGCACAATCGGTTATATTGCACCAGAGAACGCTTATACAACGGTAAGTAGTAGGGAGTGTGATGTGTACAGCTATGGAGTAGTTTTGCTTGAGCTGATAACGAGAAAGAAGGTAGTAGATCCATCGTTTACGGGTACTGATTTAGTGGGTTGGGTTAGATTGTTGTGGAGTGAAACAGGAGAAATTAATCAAATTATTGATTCAAGCTTAGCAAATGAGTGTCTAGATACTAATATAATGGAAAATGTTACTGAAGTGCTTATGGTGGCTTTGAGATGTGCTGAGAAGGATCCACACATGAGGCCCAAAATGACAGATGTTACTAAGCAGTTATCAGATTCAAATCCACAGAATAAAAAAGTAAGAAGGGCTAGTTTTGTAAAAGATTTCTAG | 3267 | 0.397 | MKLYSSLLFFSSFFHFYTLSSALNSDGLALLSFKSHWTSLPPLINSTWVPSHSTPCSWAGLKCNSFHRVISLNLSYLDIYGPLGPEIANCTHLQHIDLSYNYFNGQIPHSFANLHKLKYLSLAVNLLNAPFPHFLSQIPHLKLLDLSYNQLHGSISTSVTNMTHLQDFYLQFNNFSRAIPSSIGNCTKLQDLYLNDNQLEVVLPYTLNNLNHLLNFDVANNKLTGTIPLSFSGCRNLQFLDISFNDFGSAIPYSIGNCTALSQFAAVNSNLVGAIPSSIGLLTKLSILRLSENHLSGKIPSEIGTCRSLNELHLYSNRLDGKIPKELGKLSELRDLELFSNQLSGEIPLDIWKIRSLEHLFVYNNSLSGELPVEMTELKNLKNISLFNNMFSGVIPQSLGINSSLVQLDFVNNRFTGNLPPNLCFGRKLSVLNMGINRFRGRIPPDVGRCPTLRRVILKQNKFTEPLPDFERNTNLVFMEISNNEINGSIPSSLGNCTNLTDLMLSMNKFSGRIPPELGSLVNLRTLDLAHNNLEGPLPFQLSNCTKMDKFDAGFNFLNGSLPSSLQKWTRLNTLILNENRFSGGIPEFLLAFKDLSELQLGGNMFGGKIPASVGTLQNLIYGLNLSSNGLIGDIPVEIGKLKTLQMMDLSRNNLTGSIQVLDELLSLVEINLLNNSFQGPIPKMLMKQFNSRMSSFSGNPGLCISCSASSGLVCKESSYVKPCDSNKPMNNKGPSKIAIVMIAIGSSIFVVLLLMGLVYIFAYGRKSKQQVHITDNGGPSSLLNKVMEATSNLSERYIIGRGAHGVVYKALVSQDKAFAVKKLAFAASKGKNLSMVREIQTLGQIRHRNLVKLENFWLRQDYGLILYSYMPNGSLYDVLHEKKPAPSLEWNVRYKIAFGIAHGLAYLHYDCDPPIVHRDIKPNNILLDSDMEPHIADFGIAKLLDQSSTSNPSLSVPGTIGYIAPENAYTTVSSRECDVYSYGVVLLELITRKKVVDPSFTGTDLVGWVRLLWSETGEINQIIDSSLANECLDTNIMENVTEVLMVALRCAEKDPHMRPKMTDVTKQLSDSNPQNKKVRRASFVKDF | 1088 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g01053 | 1088 | FunFam | LRR receptor-like serine/threonine-protein kinase RPK2 | 761 | 870 | - | - | |
Vifa1g01053 | 1088 | ProSiteProfiles | Protein kinase domain profile. | 794 | 1076 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vifa1g01053 | 1088 | FunFam | Nuclear pore complex protein NUP107 | 23 | 180 | - | - | |
Vifa1g01053 | 1088 | Gene3D | Ribonuclease Inhibitor | 23 | 177 | IPR032675 | - | |
Vifa1g01053 | 1088 | Gene3D | Ribonuclease Inhibitor | 329 | 404 | IPR032675 | - | |
Vifa1g01053 | 1088 | SUPERFAMILY | RNI-like | 347 | 701 | - | - | |
Vifa1g01053 | 1088 | Gene3D | Ribonuclease Inhibitor | 472 | 722 | IPR032675 | - | |
Vifa1g01053 | 1088 | Pfam | Leucine rich repeat N-terminal domain | 24 | 64 | IPR013210 | - | |
Vifa1g01053 | 1088 | PRINTS | Leucine-rich repeat signature | 141 | 154 | - | - | |
Vifa1g01053 | 1088 | PRINTS | Leucine-rich repeat signature | 521 | 534 | - | - | |
Vifa1g01053 | 1088 | Gene3D | Ribonuclease Inhibitor | 405 | 471 | IPR032675 | - | |
Vifa1g01053 | 1088 | Gene3D | Ribonuclease Inhibitor | 264 | 328 | IPR032675 | - | |
Vifa1g01053 | 1088 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 916 | 928 | IPR008271 | GO:0004672|GO:0006468 | |
Vifa1g01053 | 1088 | FunFam | Leucine-rich repeat receptor-like protein kinase PXL1 | 325 | 423 | - | - | |
Vifa1g01053 | 1088 | Gene3D | Transferase(Phosphotransferase) domain 1 | 871 | 1086 | - | - | |
Vifa1g01053 | 1088 | FunFam | Serine/threonine-protein kinase-like protein CCR4 | 871 | 1086 | - | - | |
Vifa1g01053 | 1088 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 235 | 323 | - | - | |
Vifa1g01053 | 1088 | Pfam | Protein kinase domain | 799 | 1067 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vifa1g01053 | 1088 | Pfam | Leucine rich repeat | 188 | 247 | IPR001611 | GO:0005515 | |
Vifa1g01053 | 1088 | SUPERFAMILY | Protein kinase-like (PK-like) | 778 | 1069 | IPR011009 | - | |
Vifa1g01053 | 1088 | Gene3D | Ribonuclease Inhibitor | 178 | 263 | IPR032675 | - | |
Vifa1g01053 | 1088 | Gene3D | Phosphorylase Kinase; domain 1 | 761 | 870 | - | - | |
Vifa1g01053 | 1088 | SMART | LRR_typ_2 | 162 | 186 | IPR003591 | - | |
Vifa1g01053 | 1088 | SMART | LRR_typ_2 | 521 | 545 | IPR003591 | - | |
Vifa1g01053 | 1088 | SMART | LRR_typ_2 | 330 | 354 | IPR003591 | - | |
Vifa1g01053 | 1088 | SMART | LRR_typ_2 | 187 | 209 | IPR003591 | - | |
Vifa1g01053 | 1088 | SMART | LRR_typ_2 | 282 | 306 | IPR003591 | - | |
Vifa1g01053 | 1088 | SMART | serkin_6 | 794 | 1070 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vifa1g01053 | 1088 | SUPERFAMILY | RNI-like | 71 | 392 | - | - | |
Vifa1g01053 | 1088 | FunFam | Leucine-rich repeat receptor-like protein kinase PEPR1 | 427 | 713 | - | - | |
Vifa1g01053 | 1088 | PANTHER | RECEPTOR KINASE-LIKE PROTEIN XA21 | 437 | 1063 | - | - | |
Vifa1g01053 | 1088 | ProSitePatterns | Protein kinases ATP-binding region signature. | 800 | 823 | IPR017441 | GO:0005524 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g01053 | Vifa-Chr1 | 173539875 | 173543235 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g01053 | 21 | 1071 | Receptor kinase-like Gene Family | AT1G73080 | 50.046 | 0.0 | 1006 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Vifa1g01053 | Pkinase | 5.1e-44 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g01053 | - | - | gmx:100778035 | 1474.91 |