Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01053 ATGAAACTTTACTCCTCTCTTCTCTTCTTCTCTTCCTTCTTCCATTTCTACACTCTTTCTTCTGCACTCAACTCAGATGGCTTAGCACTCTTATCATTCAAATCTCACTGGACATCACTTCCACCTCTCATAAACTCAACATGGGTTCCTTCTCATTCAACACCATGCTCATGGGCTGGTCTCAAATGCAACTCTTTCCACCGTGTAATCTCTCTCAACCTTTCTTATCTTGATATCTACGGTCCACTAGGACCAGAAATTGCAAACTGCACACACCTTCAACACATAGATCTTAGTTACAACTACTTCAATGGCCAAATACCTCACTCTTTCGCTAACCTTCACAAACTCAAATATCTCAGTCTTGCTGTTAATCTTCTCAACGCTCCGTTTCCTCATTTCTTGTCTCAAATCCCTCACCTCAAGCTTCTTGATCTCTCTTATAACCAACTTCACGGTTCCATTTCAACTAGTGTTACCAACATGACTCATCTTCAAGACTTCTATCTCCAATTTAACAACTTCTCTCGTGCAATTCCTTCATCTATTGGGAACTGTACTAAGTTACAAGACTTGTATTTGAATGATAATCAGTTGGAGGTTGTTCTTCCTTACACTCTCAACAATCTCAATCATCTTCTTAACTTTGATGTTGCCAACAATAAACTAACAGGTACTATTCCATTGAGTTTTTCTGGTTGTAGAAATTTACAGTTTTTGGATATTTCGTTCAATGATTTTGGTAGTGCCATTCCATATAGCATTGGTAATTGTACTGCTTTATCACAATTTGCTGCTGTGAATTCTAACTTGGTTGGAGCTATTCCATCTTCCATTGGTCTGCTCACCAAGCTTTCGATTCTACGCCTTTCGGAGAATCATTTGTCTGGAAAGATACCTTCTGAAATAGGTACCTGCAGGTCTTTGAATGAGTTGCACTTGTATTCCAATCGACTTGATGGAAAGATTCCAAAAGAATTGGGAAAACTCAGTGAATTAAGGGACCTTGAACTGTTTTCTAATCAATTGAGTGGCGAAATTCCGCTTGATATATGGAAGATTCGAAGTCTCGAGCATCTGTTTGTGTATAATAATAGCCTTTCTGGTGAACTTCCTGTGGAGATGACAGAGCTCAAGAACCTTAAGAACATTTCATTGTTTAACAACATGTTCTCTGGGGTTATACCTCAAAGCTTGGGAATTAACAGCAGTTTGGTACAGTTGGACTTTGTGAATAACAGGTTCACTGGGAACCTCCCACCAAATCTTTGTTTTGGAAGAAAGCTGAGTGTTTTGAATATGGGAATCAATCGATTTCGAGGAAGAATACCTCCTGATGTTGGAAGATGCCCAACTCTAAGAAGGGTCATTCTTAAACAAAACAAATTTACCGAGCCTCTTCCTGATTTTGAAAGGAACACCAATCTAGTATTCATGGAGATCAGCAACAACGAAATCAATGGATCAATTCCGTCGAGCTTAGGAAACTGCACAAATCTCACTGATTTAATGTTGTCCATGAACAAATTTAGTGGGCGTATACCACCAGAGTTAGGAAGCCTTGTGAATCTTCGGACGCTGGATCTTGCTCACAATAACTTAGAAGGTCCTTTGCCTTTTCAGCTCTCAAACTGTACCAAAATGGACAAGTTTGATGCGGGATTTAATTTCCTGAATGGTTCATTGCCGTCGAGTTTGCAGAAGTGGACAAGGCTAAACACACTAATTTTGAATGAGAATCGTTTTAGTGGCGGCATTCCAGAGTTCTTGTTGGCTTTTAAAGATCTTTCTGAACTACAGCTTGGTGGCAATATGTTTGGAGGAAAAATTCCTGCCTCGGTTGGGACATTGCAGAATTTGATCTACGGGTTGAATCTAAGTTCTAATGGGCTGATAGGAGACATTCCTGTGGAAATTGGAAAGCTGAAAACTCTACAAATGATGGATCTTTCTCGGAACAATTTGACAGGAAGCATACAAGTTCTTGATGAACTCCTTTCGTTAGTTGAAATCAATCTTTTGAACAATTCTTTTCAGGGTCCCATACCAAAGATGCTAATGAAGCAGTTTAATTCTCGCATGTCTTCATTTTCGGGGAATCCCGGGCTATGTATCAGTTGTTCAGCATCCAGTGGCTTGGTTTGCAAGGAAAGCAGCTATGTAAAACCATGTGACAGCAACAAACCTATGAATAACAAAGGCCCAAGTAAAATTGCAATTGTGATGATAGCTATAGGATCCTCAATATTTGTTGTTTTGCTGTTGATGGGATTAGTTTATATCTTTGCTTATGGCAGAAAATCTAAGCAGCAAGTCCATATCACCGATAACGGAGGTCCTTCGTCCCTTCTTAACAAAGTCATGGAGGCTACATCGAACCTAAGTGAACGGTACATTATTGGCAGAGGAGCCCATGGAGTTGTCTATAAAGCCCTTGTAAGTCAAGACAAAGCTTTTGCTGTAAAGAAGCTAGCATTTGCTGCCAGCAAAGGTAAGAACTTGAGCATGGTTAGAGAAATTCAAACCCTTGGACAAATTAGGCATCGAAATCTTGTCAAATTGGAAAACTTTTGGTTGCGACAAGATTATGGTCTAATTTTGTATAGCTACATGCCAAATGGAAGCCTTTATGATGTCTTGCATGAAAAGAAACCAGCACCGTCTTTAGAGTGGAATGTCCGGTATAAGATAGCTTTTGGAATTGCTCATGGGTTGGCTTACCTCCATTATGATTGCGATCCTCCCATAGTGCACCGAGATATCAAACCAAACAATATACTTCTAGACTCTGATATGGAGCCTCACATTGCAGACTTTGGTATTGCCAAACTTTTGGACCAGTCCTCTACATCGAATCCTTCGTTATCTGTGCCTGGCACAATCGGTTATATTGCACCAGAGAACGCTTATACAACGGTAAGTAGTAGGGAGTGTGATGTGTACAGCTATGGAGTAGTTTTGCTTGAGCTGATAACGAGAAAGAAGGTAGTAGATCCATCGTTTACGGGTACTGATTTAGTGGGTTGGGTTAGATTGTTGTGGAGTGAAACAGGAGAAATTAATCAAATTATTGATTCAAGCTTAGCAAATGAGTGTCTAGATACTAATATAATGGAAAATGTTACTGAAGTGCTTATGGTGGCTTTGAGATGTGCTGAGAAGGATCCACACATGAGGCCCAAAATGACAGATGTTACTAAGCAGTTATCAGATTCAAATCCACAGAATAAAAAAGTAAGAAGGGCTAGTTTTGTAAAAGATTTCTAG 3267 0.397 MKLYSSLLFFSSFFHFYTLSSALNSDGLALLSFKSHWTSLPPLINSTWVPSHSTPCSWAGLKCNSFHRVISLNLSYLDIYGPLGPEIANCTHLQHIDLSYNYFNGQIPHSFANLHKLKYLSLAVNLLNAPFPHFLSQIPHLKLLDLSYNQLHGSISTSVTNMTHLQDFYLQFNNFSRAIPSSIGNCTKLQDLYLNDNQLEVVLPYTLNNLNHLLNFDVANNKLTGTIPLSFSGCRNLQFLDISFNDFGSAIPYSIGNCTALSQFAAVNSNLVGAIPSSIGLLTKLSILRLSENHLSGKIPSEIGTCRSLNELHLYSNRLDGKIPKELGKLSELRDLELFSNQLSGEIPLDIWKIRSLEHLFVYNNSLSGELPVEMTELKNLKNISLFNNMFSGVIPQSLGINSSLVQLDFVNNRFTGNLPPNLCFGRKLSVLNMGINRFRGRIPPDVGRCPTLRRVILKQNKFTEPLPDFERNTNLVFMEISNNEINGSIPSSLGNCTNLTDLMLSMNKFSGRIPPELGSLVNLRTLDLAHNNLEGPLPFQLSNCTKMDKFDAGFNFLNGSLPSSLQKWTRLNTLILNENRFSGGIPEFLLAFKDLSELQLGGNMFGGKIPASVGTLQNLIYGLNLSSNGLIGDIPVEIGKLKTLQMMDLSRNNLTGSIQVLDELLSLVEINLLNNSFQGPIPKMLMKQFNSRMSSFSGNPGLCISCSASSGLVCKESSYVKPCDSNKPMNNKGPSKIAIVMIAIGSSIFVVLLLMGLVYIFAYGRKSKQQVHITDNGGPSSLLNKVMEATSNLSERYIIGRGAHGVVYKALVSQDKAFAVKKLAFAASKGKNLSMVREIQTLGQIRHRNLVKLENFWLRQDYGLILYSYMPNGSLYDVLHEKKPAPSLEWNVRYKIAFGIAHGLAYLHYDCDPPIVHRDIKPNNILLDSDMEPHIADFGIAKLLDQSSTSNPSLSVPGTIGYIAPENAYTTVSSRECDVYSYGVVLLELITRKKVVDPSFTGTDLVGWVRLLWSETGEINQIIDSSLANECLDTNIMENVTEVLMVALRCAEKDPHMRPKMTDVTKQLSDSNPQNKKVRRASFVKDF 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01053 1088 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 761 870 - -
Vifa1g01053 1088 ProSiteProfiles Protein kinase domain profile. 794 1076 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01053 1088 FunFam Nuclear pore complex protein NUP107 23 180 - -
Vifa1g01053 1088 Gene3D Ribonuclease Inhibitor 23 177 IPR032675 -
Vifa1g01053 1088 Gene3D Ribonuclease Inhibitor 329 404 IPR032675 -
Vifa1g01053 1088 SUPERFAMILY RNI-like 347 701 - -
Vifa1g01053 1088 Gene3D Ribonuclease Inhibitor 472 722 IPR032675 -
Vifa1g01053 1088 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Vifa1g01053 1088 PRINTS Leucine-rich repeat signature 141 154 - -
Vifa1g01053 1088 PRINTS Leucine-rich repeat signature 521 534 - -
Vifa1g01053 1088 Gene3D Ribonuclease Inhibitor 405 471 IPR032675 -
Vifa1g01053 1088 Gene3D Ribonuclease Inhibitor 264 328 IPR032675 -
Vifa1g01053 1088 ProSitePatterns Serine/Threonine protein kinases active-site signature. 916 928 IPR008271 GO:0004672|GO:0006468
Vifa1g01053 1088 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 325 423 - -
Vifa1g01053 1088 Gene3D Transferase(Phosphotransferase) domain 1 871 1086 - -
Vifa1g01053 1088 FunFam Serine/threonine-protein kinase-like protein CCR4 871 1086 - -
Vifa1g01053 1088 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 235 323 - -
Vifa1g01053 1088 Pfam Protein kinase domain 799 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01053 1088 Pfam Leucine rich repeat 188 247 IPR001611 GO:0005515
Vifa1g01053 1088 SUPERFAMILY Protein kinase-like (PK-like) 778 1069 IPR011009 -
Vifa1g01053 1088 Gene3D Ribonuclease Inhibitor 178 263 IPR032675 -
Vifa1g01053 1088 Gene3D Phosphorylase Kinase; domain 1 761 870 - -
Vifa1g01053 1088 SMART LRR_typ_2 162 186 IPR003591 -
Vifa1g01053 1088 SMART LRR_typ_2 521 545 IPR003591 -
Vifa1g01053 1088 SMART LRR_typ_2 330 354 IPR003591 -
Vifa1g01053 1088 SMART LRR_typ_2 187 209 IPR003591 -
Vifa1g01053 1088 SMART LRR_typ_2 282 306 IPR003591 -
Vifa1g01053 1088 SMART serkin_6 794 1070 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01053 1088 SUPERFAMILY RNI-like 71 392 - -
Vifa1g01053 1088 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 427 713 - -
Vifa1g01053 1088 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 437 1063 - -
Vifa1g01053 1088 ProSitePatterns Protein kinases ATP-binding region signature. 800 823 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01053 Vifa-Chr1 173539875 173543235 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01053 21 1071 Receptor kinase-like Gene Family AT1G73080 50.046 0.0 1006
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa1g01053 Pkinase 5.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01053 - - gmx:100778035 1474.91