Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01052 ATGGGTAGGCGAAAAACTAAACCACGTCGATCGGGTGGGATAATAATAGAAACAAATAGTACTACAAAAACAGAACTGGATAAACCTAATGTTGTAGAAGTGGGAGAAGAAGAAAAAAATGATTTTGGTGATATTGATATACCTCATTTTGTTGAAGTTGACCGCTCTGGTTGGTTGTCAGATGAACACCTTGATATTTCTGAAGTTGTTCTTAGGGATTTAAATTTAAGAGATGGTTTTAATGGTTTTGAATTGTCTGAAGATTTTTCTCAAGATCCCCAATTCTCGTTAAGATTTCGGTTATGTAATGTCGGTAATGTTCTTGGTCGAATCAAACTTGGCCATTGGCCTGTATTACCTTACACTGATATTCATTTAGAGTTTGTTAAAAGAGCTACAGGTGATAATAATGAAACATGCAAAGTGTTGTTATCGGGTATTTTTGATGGACCCGATGAAGGTGCTTCTGGTCTTGTTCATTTGGCGAGTTTGAAATTTGTTACATTGAGGGTGGTTCTGGGGATTAGGCTTTCTGAGGACATAACTTCCCTCAGGGTGAGGGTTGAGGTACTAAAGAGTGCATTCGATGCATGTGAGTCGCTTCTTGAGAGTTCTAGACAGCTATGGAAAAAGAGTATGATGAATGTCATGTCTTGGTTACGACCAGAAATAATGACTTCTGAGGTTAGGTATGGGTTAAGTAGCTACATGGAAATGCAAGTTGATTCGCTGACAGATATGGAAGACAATGGTGGCTATGATGCAGGGAATGGCTCGAGGTTCGATCCTGCTGGTTTTTATGAAGCCATTAGGCCTTCAACAGCAGAGCCAATGCTTGAAGGTGACATACCTGAGTTACTTCCTGAACTTCGGCCATATCAACGGCGTGCAGTTTTTTGGATGGTAAAACGAGAAAAAGAAATGGAAGAAAGTCAGATTGAAAGAGAAAGAAATCAGTTACATTCTCCATTATGTGTGGCGGTTAATTTTCTGGACACAAGCTCTAAAATGTTTTTCAATCCGTTCAGTGGAAATATTTCCTTGTGCCCAGAGACTTCTTCACCTTATGTATTCGGAGGCATTCTTGCTGATGAGATGGGATTAGGAAAAACTGTAGAATTGCTTGCCTGCATCTTTGCTCACCGGAGATCAGCAAATGAAAGTGACACACTAATTGCTTCAGTTCCCCAAGTTAATGGCTACGAAAAAGCCGCTTTAAAAAGACTCAAAAGAGAGCGCGTGGAGTGCATATGTGGAGCTGTCAGCGAAAGTCTCCAATATGAAGGACTATGGGTTCAGTGTGACACTTGTGATGCTTGGCAACATGCAGATTGTGTTGGTTATTCGCCTAAAGGAAAATCAGTGAAATCAAAGCAAGGATTGGAAAGCAAAACACATAAAACTACTATAGCTTTGAGGAATGGGGAATATGTATGTCAGATGTGCTCTGAACTAATACAAGCTACTGAATCTCCTATTGCCTCTGGTGCTACACTCATTGTCTGCCCAGCTCCTATTTTGCCCCAGTGGCACGATGAAATTATTCGTCATACACGTCCAGGAGCCTTGAAAACTTGTATTTATGAAGGTGTGCATGACACATCTTTCTCTAATTCATCTTTGATGGATATCAGTGATCTTGCCAGTGCGGACATTGTAATTACTACATATGATGTGCTTAAAGACGATTTGTCCCATGACTCTGATAGACATATAGGTGATCGACACCTTTTAAGATTTCAGAAAAGGTACCCAGTTGTCCCAACTCTTCTTACCAGAATATACTGGTGGAGGATTTGTTTAGATGAGGCTCAAATGGTGGAGAGTACTGTTGTTACCGCTGCAACTGAAATGGCTCTAAGACTCCATTCCAAGCATCGTTGGTGCGTTACAGGAACCCCAATTCAGAGAAAGTTTGATGACTTATATGGACTTTTAAGGTTCACTAAAACTAGTCCTTTCAATATATACAGATGGTGGAGTGAAGTTATTCGAGATCCTTATGAGAAGGGAGATGTAGGAGCTATGGAATTTACACACAGAATTTTCAAGCAAATCATGTGGCGTTCTTGTAAACAACATGTTGCAGATGAATTGGAACTTCCTTCCCAAGAGGAGTGCGTCTCTTGGCTTACACTATCACCAGTAGAAGAGCACTTTTACCAGAGGCAACATGAAGCTTTTGTTAGAGATTCCCATGAACTTATCGAAAGTTTGAGAAATGATATTCTTATAAGAAAAGTCCCAGATTCTGTATCTTTGAATGGTTCGTCTGATCCTTTCATCACTGAAGTGGAGGCAGGGAAGCTATTTTATGCTTTGCTGAAGCTTCGTCAAGCTTGTTGTCATCCCCAGGTTGGAAGTTCTGGGTTGCGATCCATGCAGCAGTCTCCTATGACAATGGCGGAAGTACTAACGGTCCTTATAAGCAAGACTAAGGTAGAAGGTGAGGAAGCTCTCAGGAGGTTAGTTATGGCTCTGAATGCACTTGCAGCAATCGTTACAATACAAAAAGATTTTTCTCAAGCTGCTTTGCTGTATAATGAAGCTCTTACTTTAGCTGAAGAGCATTTTGAAGATTTCCGTATTGATCCTTTGTTAAATATCCACATTCATCATAATCTTGCTAATATAATCCCACTGGCTGAGAATTTTGCTTCGATCTTGCCATGCAAACGAAAGCAAGTATCTGGAACTTCTGCAGTTGATACAACCAAAAAGCATTCTATTGCAAAGGTTGATCGTGATCATGTGAAGAGGCACAAAATAAGTAACTGCGAGAACATAAATTTAACAGTGGCTTCTGCAGTACCATCAAATGTTGTATCTGGTCTTTCAGAAAATGACTTAAATGATAGAGAATTTGATGATTTGTCTGCAAGTTCCGTCAAATATCTGATAGCAGAGTGTGAAGATTTAAAACTTAAATACTTATCTGTGTTCAATTCAAAGCTAACTGCAGCTCAACAGGAGTTTCAAAGTTCTTACATGCAGGTTTGTAACTTATATCGTGACACCAGAAAAAATCAAAACACACTTTGGTGGTTAGAAGCACTTCATAATGCTGAGCAGAACAAGGATTTCTCAACCGAGTTGCTTAGAAAGATCGAAGAAGCCATGTCAGGAAATCCAAAATCGTCACGAGTAGCTCCTCGTTTTCGAAGCATAAGCTCTTTGAAGTATCAAATTCAAACCAGTTTGGATCAGTTAGAAGCCTCTAGGAAAGTGCTATTAGATCGTCTGTTAGAGATTGATCAGACAATGGAAAAACCAAATGATGAAGATATTGAACGCGTTGGTAAATGTCAAAATTGTCAACCTAATTGTGATGGCCCCCCATGCGTTCTGTGTGAACTAGATGAATTGTTTCAGGACTATGAAGCTAGACTGTTTCTTCTCAAGAATGAACGTGGAGGGATAATTTCATCTGCGGAGGAGGCAGTAGGTTTTAAAAAGAAAATTTTTGCACGTAATCATTTCCTCGCAAATCTATCAAAGTCTAATCACAGTTCAACAGTACCTGATATTGATTATGATGAGTCCAGAAAAAGGGATGCTGGACAGAGAGTTGTGACTTCGAGATCGGCATCTATGCTGGAGGTTCTTCTTGGAGTTATAAAGAACTATTGCAAGACTCAGTTTGGAAAGGACAGTGTCTCAGCAGCCACGAAGCATTTACATATTTTTGAGGGAATGCGAAAGGAGTTTGCTTATGCAAGGTCTTTGGCATCAGCTCAAGCTCAGTATCTGCGAGCCCATGATGAAATAAAGATGGCGGTTTCTCGTTTACACCTAAGGGCAAATGAAGATGATAAATCTTTTGATGCTCTAGGTGAAAATGAATTATATGCGGCTAGCTCAAACTTTTCCCAGGAGAAGTTTATGTCACTGGCCTTGTTGTCACAGATAAAGGGAAAGCTACGCTACTTAAAGGGTTTGGTTCAATCTAACCAAAAGCTGTCATTGGAAAGTCCAGATAACTCTTCATGCACTCAAGACACAAATGCTATGTCAAATTCTACAGAAGAGAGGGTTGAACTCATATCTAAAACTTATGAGGAAACATGTCCAATTTGCCAAGAAAAGCTAGGCCATCAGAGAATGGTGTTTCAATGTGGGCATGTTACCTGCTGTAAATGTTTATTTGCTTTGACTGAGAAGAGGCTTCAACATAGCAAGACTCATAATTGGGTGATGTGCCCTACATGTCGACAGCATACTGATTTTGGAAACATTGCCTATGCTGTTGATGCACAAAAGGAATCTCCCAATTCGTCAATGCCGCATACAACTGACAGCTGTGAAAAACACGAAGCATCTATTCCTGTTAAAGGCTCATATGGAACCAAGATTGAAGCAGTCACAAGAAGAATCTTGTGGATAAAGGCTACAAATCATAAATCAAAAGTTTCTTGTATTTACAAGAAAGCTCACACCGCCATCAGTCAATTTAGGGGAAAACAGAATGACTCAAAAGGATGTGAGGGGTCAGAACCAAAATCTATTCAGGTGTTGTTGCTTTTAATCCAAGATGGAGCCAATGGTCTCAATCTTTTGGAAGCACAGCATGTGGTCCTTGTGGAGCCATTACTCAATCCAGCTGCTGAAGCACAAGCAATCAGTCGCGTACATCGTATTGGCCAAAAAAATAAGACCCTCATTCATCGCTTCTTAGTAAGTATTTCTCTCTCTTTCTCTCTCGCACCACTCAAATTAAATCATCCTTGTTGTCTTTGA 4737 0.4 MGRRKTKPRRSGGIIIETNSTTKTELDKPNVVEVGEEEKNDFGDIDIPHFVEVDRSGWLSDEHLDISEVVLRDLNLRDGFNGFELSEDFSQDPQFSLRFRLCNVGNVLGRIKLGHWPVLPYTDIHLEFVKRATGDNNETCKVLLSGIFDGPDEGASGLVHLASLKFVTLRVVLGIRLSEDITSLRVRVEVLKSAFDACESLLESSRQLWKKSMMNVMSWLRPEIMTSEVRYGLSSYMEMQVDSLTDMEDNGGYDAGNGSRFDPAGFYEAIRPSTAEPMLEGDIPELLPELRPYQRRAVFWMVKREKEMEESQIERERNQLHSPLCVAVNFLDTSSKMFFNPFSGNISLCPETSSPYVFGGILADEMGLGKTVELLACIFAHRRSANESDTLIASVPQVNGYEKAALKRLKRERVECICGAVSESLQYEGLWVQCDTCDAWQHADCVGYSPKGKSVKSKQGLESKTHKTTIALRNGEYVCQMCSELIQATESPIASGATLIVCPAPILPQWHDEIIRHTRPGALKTCIYEGVHDTSFSNSSLMDISDLASADIVITTYDVLKDDLSHDSDRHIGDRHLLRFQKRYPVVPTLLTRIYWWRICLDEAQMVESTVVTAATEMALRLHSKHRWCVTGTPIQRKFDDLYGLLRFTKTSPFNIYRWWSEVIRDPYEKGDVGAMEFTHRIFKQIMWRSCKQHVADELELPSQEECVSWLTLSPVEEHFYQRQHEAFVRDSHELIESLRNDILIRKVPDSVSLNGSSDPFITEVEAGKLFYALLKLRQACCHPQVGSSGLRSMQQSPMTMAEVLTVLISKTKVEGEEALRRLVMALNALAAIVTIQKDFSQAALLYNEALTLAEEHFEDFRIDPLLNIHIHHNLANIIPLAENFASILPCKRKQVSGTSAVDTTKKHSIAKVDRDHVKRHKISNCENINLTVASAVPSNVVSGLSENDLNDREFDDLSASSVKYLIAECEDLKLKYLSVFNSKLTAAQQEFQSSYMQVCNLYRDTRKNQNTLWWLEALHNAEQNKDFSTELLRKIEEAMSGNPKSSRVAPRFRSISSLKYQIQTSLDQLEASRKVLLDRLLEIDQTMEKPNDEDIERVGKCQNCQPNCDGPPCVLCELDELFQDYEARLFLLKNERGGIISSAEEAVGFKKKIFARNHFLANLSKSNHSSTVPDIDYDESRKRDAGQRVVTSRSASMLEVLLGVIKNYCKTQFGKDSVSAATKHLHIFEGMRKEFAYARSLASAQAQYLRAHDEIKMAVSRLHLRANEDDKSFDALGENELYAASSNFSQEKFMSLALLSQIKGKLRYLKGLVQSNQKLSLESPDNSSCTQDTNAMSNSTEERVELISKTYEETCPICQEKLGHQRMVFQCGHVTCCKCLFALTEKRLQHSKTHNWVMCPTCRQHTDFGNIAYAVDAQKESPNSSMPHTTDSCEKHEASIPVKGSYGTKIEAVTRRILWIKATNHKSKVSCIYKKAHTAISQFRGKQNDSKGCEGSEPKSIQVLLLLIQDGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFLVSISLSFSLAPLKLNHPCCL 1578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01052 1578 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 32 1560 - -
Vifa1g01052 1578 CDD DEXQc_SHPRH 290 690 - -
Vifa1g01052 1578 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 466 652 IPR014001 -
Vifa1g01052 1578 ProSitePatterns Zinc finger PHD-type signature. 416 482 IPR019786 -
Vifa1g01052 1578 SMART PHD_3 415 483 IPR001965 -
Vifa1g01052 1578 Coils Coil 1019 1039 - -
Vifa1g01052 1578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 687 IPR027417 -
Vifa1g01052 1578 Gene3D - 468 712 IPR038718 -
Vifa1g01052 1578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 595 1559 IPR027417 -
Vifa1g01052 1578 SMART ultradead3 286 659 IPR014001 -
Vifa1g01052 1578 Pfam PHD-finger 416 484 IPR019787 -
Vifa1g01052 1578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 416 459 IPR013083 -
Vifa1g01052 1578 Gene3D - 1474 1563 IPR027417 -
Vifa1g01052 1578 SUPERFAMILY FYVE/PHD zinc finger 412 484 IPR011011 -
Vifa1g01052 1578 CDD SF2_C_SNF 1447 1558 - -
Vifa1g01052 1578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1340 1423 IPR013083 -
Vifa1g01052 1578 ProSiteProfiles Zinc finger RING-type profile. 1356 1404 IPR001841 -
Vifa1g01052 1578 SMART ring_2 1356 1403 IPR001841 -
Vifa1g01052 1578 SUPERFAMILY RING/U-box 1352 1408 - -
Vifa1g01052 1578 Pfam SNF2-related domain 293 786 IPR000330 GO:0005524|GO:0140658
Vifa1g01052 1578 Gene3D - 346 415 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01052 Vifa-Chr1 173385785 173397168 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01052 286 784 RAD5 or RAD16-like Gene Family AT5G22750 28.320 5.47e-42 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa1g01052 SNF2_N 1.3e-83 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01052 K15710 - gmx:100776659 2442.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01052 1 173385785 173397168 Vifa1g01052 1 173385785 173397168 ECH