Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01045 ATGGCTACCAACCAAGGTGTCCTTTCATCTCTTGACAATGCCAAAACACAAAGCTACCATTACATGGCAATAGTGATAGCAGGAATGGGGTTCTTCACTGATGCATATGATCTCTTCTGCATCACGGCCGTTACAAAGCTTATCGGTCGATTGTACTACTCCGATCCAACCGGTCAGGGTCCCGGAAAGCTTCCAACAAACGTAAACAATGCGATAACCGGTGTCGCGTTGTGCGGTACCCTCGCAGGGCAACTCTTCTTTGGCTGGCTTGGAGACAAACTCGGTAGAAAAAAAGTTTACGGCATAACGCTAACCACAATGGTTGGTTTTGCTTTAGCTTCAGGTCTATCATTTGGCTCCACGTCGAAAACTGTGGTTACTAGTCTTTGTTTCTTTAGATTCTGGCTAGGATTCGGCATTGGTGGAGACTATCCTCTCTCAGCTGTGATCATGTCGGAATATGCTAATAAGAAAACAAGAGGAAGTTTCATTGCTGCTGTTTTTGCTATGCAAGGTGTTGGAATATTGGTAGCAGGAGGCGTAGCTATGTTCGTCTCAAAACTATTCTTATCTGCTTTTCCAGCTCCTGATTTTGAAATTGATCCTGTTTTGTCTACTCAACCAGAAGGAGATTTTGTATGGAGAATTGTGTTAATGTTTGGTGCTGTTCCTGCAGCATTAACTTATTATTGGAGAATCAAAATGCCTGAAACTGCCAGATATACTGCTTTGGTAGAAGGAGATCACAAAAAAGCCGCCGAGGATATGGCCAAAGTTCTTGATAAAAAAATACTTTTACAAGAATCTAATACGAGCAGGATTGCTATCGGAGAACCACTCGGTTCACGCTCGTATGGACTCTTCTCTTCGGAGTTTCTTAATCGACACGGCCTTCATCTTTTAGGAACAACTAGCACATGGTTTTTATTGGACATTGCTTTCTATAGTCTTCAACTGACACAAAAAGATATTTATCCAGCAAGTGGACTTGTATACAAGGCCTCCAAAATGAATGCAATAGAGGAAGTGTTTCAGCTCTCTCGAGCGATGTTCGTGATTGCCTTGCTCGCCACGGTACCTGGATACTGGTGCACGGTTTTCCTAATCGACAAGATCGGACGGTACAGAATCCAACTAGTTGGATTTCTTGTGATGTTTGTTTGTATGTGGTTTCTAGGACACAGTTATAAATCATACAGGGGAGAAGAATCTGCATGCAAGAAAGAATCAAAATATGAATTTTGCAATGGAAACCTAATCATGTTTGCTATACTTTTTGGACTCACACTTTTTTTTGCTAACTTTGGACCTAATAGTACTACATTTATAGTGCCGGCAGAGCTGTTCCCTGCGAGGCTCCGTTCGACGTGTCATGGAATATCGGCTGCAGCTGGAAAATCGGGAGCTATCATCGGTGCTTTTGTTGTGCAAAGCCATATAGATAATGCACATGATAAAACAAAAGGAATCAAGCAGGCCATTATGGCGCTTTCGTTTGTAAACTTGCTTGGATTCCTTTGCACTTTCTTGGTGCCTGAAACGCAAGGTCGATCGCTCGAAGAAATCTCGGGAGAGGAGAAAGAAATGCAGGAAAATAATGGTGCAGAAGAGGCAATAAATGATGAAAAAGAGGGAATAAGAAACACTGGTGTTGATAAATCTCCAGGAACTTCAATAGTTTAG 1683 0.4225 MATNQGVLSSLDNAKTQSYHYMAIVIAGMGFFTDAYDLFCITAVTKLIGRLYYSDPTGQGPGKLPTNVNNAITGVALCGTLAGQLFFGWLGDKLGRKKVYGITLTTMVGFALASGLSFGSTSKTVVTSLCFFRFWLGFGIGGDYPLSAVIMSEYANKKTRGSFIAAVFAMQGVGILVAGGVAMFVSKLFLSAFPAPDFEIDPVLSTQPEGDFVWRIVLMFGAVPAALTYYWRIKMPETARYTALVEGDHKKAAEDMAKVLDKKILLQESNTSRIAIGEPLGSRSYGLFSSEFLNRHGLHLLGTTSTWFLLDIAFYSLQLTQKDIYPASGLVYKASKMNAIEEVFQLSRAMFVIALLATVPGYWCTVFLIDKIGRYRIQLVGFLVMFVCMWFLGHSYKSYRGEESACKKESKYEFCNGNLIMFAILFGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKSGAIIGAFVVQSHIDNAHDKTKGIKQAIMALSFVNLLGFLCTFLVPETQGRSLEEISGEEKEMQENNGAEEAINDEKEGIRNTGVDKSPGTSIV 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01045 560 ProSiteProfiles Major facilitator superfamily (MFS) profile. 23 516 IPR020846 GO:0022857
Vifa1g01045 560 Gene3D MFS general substrate transporter like domains 279 540 IPR036259 -
Vifa1g01045 560 Gene3D MFS general substrate transporter like domains 20 260 IPR036259 -
Vifa1g01045 560 FunFam Inorganic phosphate transporter 1-6 19 538 - -
Vifa1g01045 560 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 21 521 - -
Vifa1g01045 560 Pfam Sugar (and other) transporter 24 523 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vifa1g01045 560 SUPERFAMILY MFS general substrate transporter 12 524 IPR036259 -
Vifa1g01045 560 MobiDBLite consensus disorder prediction 523 549 - -
Vifa1g01045 560 CDD MFS_PhT 24 514 - -
Vifa1g01045 560 MobiDBLite consensus disorder prediction 523 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01045 Vifa-Chr1 172424873 172426555 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01045 1 527 Inorganic Solute Cotransporters AT5G43360 61.639 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01045 K08176 - gmx:100820250 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01045 1 172424873 172426555 Vifa1g01045 1 172424873 172426555 ECH