Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01044 ATGGGAAGAAGACCAGCAAGGTGTTACCGTCAGATTAAGAACAAGCCATACCCAAAGTCCCGATTCTGTCGTGGTGTTCCCGATCCCAAGATCAGGATCTATGATGTCGGCATGAAGAAGAAAGGTGTTGACGAGTTTCCTTTCTGTGTCCATCTTGTCAGTTGGGAGAAGGAGAATGTTTCAAGCGAGGCACTTGAGGCGGCTCGTATTGCTTGCAACAAGTACATGACGAAGTTTGCTGGAAAGGATGCATTCCACTTGAGGGTCAGGGTTCATCCTTTCCATGTTCTTAGGATTAACAAGATGCTTTCCTGTGCTGGAGCTGATAGGCTTCAGACTGGTATGCGTGGTGCTTTTGGAAAGCCACAAGGTGTTTGTGCTAGGGTTGCTATTGGACAGGTGCTTCTCTCTGTTCGCTGCAAGGACAGCAATGGACAGAATGCACAGGAGGCTCTTCGTAGGGCTAAGTTTAAGTTCCCTGGTCGTCAGAAGATCATTGTCAGTAGGAAGTGGGGATTCACCAAGATTGACAGAAATGATTACTTGAAGTTGAAGTCAGAGAACAGGATTCTGAATGATGGTGTGAATGCTAAGCTTCTTGGATGCCATGGACCTCTTGCCAATCGTCAACCTGGAAGGGCTTTTATCAATGCAAGCTGCAATGCTTAG 669 0.4694 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDSNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKIDRNDYLKLKSENRILNDGVNAKLLGCHGPLANRQPGRAFINASCNA 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01044 222 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Vifa1g01044 222 FunFam 60S ribosomal protein L10 1 206 - -
Vifa1g01044 222 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Vifa1g01044 222 PANTHER 60S RIBOSOMAL PROTEIN L10 1 213 IPR001197 GO:0003735|GO:0005840|GO:0006412
Vifa1g01044 222 Gene3D Ribosomal protein L10e/L16 1 218 IPR036920 GO:0003735|GO:0005840|GO:0006412
Vifa1g01044 222 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Vifa1g01044 222 NCBIfam 50S ribosomal protein L16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Vifa1g01044 222 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Vifa1g01044 222 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01044 Vifa-Chr1 172322678 172324098 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01044 1 219 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 86.301 2.74e-142 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01044 K02866 - oeu:111368772 430.639