Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01040 ATGGAAACTTTGGATGCTAATTCATCATCATCATCATCGTTATCACCATCATCATCATCTTTTAATAGTGATGATAACAATGGTAGTGTAACTTGGTATGGGATGAGGTTACCTTTTGTTAACCCCTTTTTGTCACCACTTACATTTCTATTGGATTATTCTGGAGTTTTGCGTTCGACTAATGATTCCGAGGCTGTGGTTGTTAACAATCGAGTTTCTGGTTCTGGTTCTGGTTCGGAATTAAGGTCCCGTGTTGATACTGATAGTGCCACATCTGTTGCTGGGAGCAGTGCAGGGGAGGTTGCTATAAGGATTATTGGAGCTGGAGAGAGTATTCAAAACCATGTCGGGGAGTTGGGTTATGATGATTGTGGGGAGGATCTGATTGGTGAGAGAAGTGGAAATGGAATGCCTGCATTGGATGATGATGATGCCGGGAGTCGCGGGGGGATTGAGGCTAGTGAGGGGGTTCCCCTTGTGTCTTCTTCGTCTTCATCGTCGTTGGCGGGAAGTGGACGGGTGGATGGTGATGCTTCTGTGAATGGATCAGAAAATAACAATAGAGATTCGTCTTCTTATCAGAGATATGATATTCAGCTTGTTGCCAAGTGGATTGAGCAGATTCTTCCTTTCTCACTCTTGTTATTGGTTGTTTTCATCCGACAACATTTGCAAGGTTTTTTTGTCACAATTTGGATAGCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACAGCTTTGAAGGGAGACAGGAAAGTTTCTTTGCTTGCTGGTATCTCTGTTGCTTTCATTCTTCATGTGATAGGCATTTACTGGTGGTATCGGAATGATGATATTTTATATCCACTGGTCATGTTACCTCCAAACCCAACACCTTTCTGGCATGCAATATTCACCATCTTGGTCAATGATATATTGATGCGGCAAGTTGCAATGGCTTTTAAGTGTATTCTGCTTATATATTACAAAAAGGGGAAAGGTCATAACTTCCGTCGGCAGGCTCAACTGTTGACTCTTGTTGAGTACACACTGCTGTTGTATCGTGCGCTGTTGCCTACTCCAGTTTGGTACCGGTTTTTCTTGAATAGGGAATATGGAAGTCTCTTTTCATCCCTAACCACAGGGTTGTATTTAACTTTCAAGCTAACATCTGTTGTTGAGAAGGTCCAAAGCTTCATTTCCGCCTTGAAAGCGTTATCAAGAAAGGAAATTCATTATGGGGTTTATGCAACAGCGGAACAGGTTACTGCTGCTGGTGATCTATGTGCTATATGCCAGGAGAAGATGCATTCACCTATCTTATTGCGTTGCAAACACATTTTCTGCGAAGATTGTGTATCTGAGTGGTTTGAGAGAGAAAGGACTTGCCCTCTCTGCAGAGCATTGGTTAAAGCAGCCGATCTTCGGACCTTCGGAGATGGATCAACTAGTTTATTTTTCCAGTTGTTTTAA 1461 0.423 METLDANSSSSSSLSPSSSSFNSDDNNGSVTWYGMRLPFVNPFLSPLTFLLDYSGVLRSTNDSEAVVVNNRVSGSGSGSELRSRVDTDSATSVAGSSAGEVAIRIIGAGESIQNHVGELGYDDCGEDLIGERSGNGMPALDDDDAGSRGGIEASEGVPLVSSSSSSSLAGSGRVDGDASVNGSENNNRDSSSYQRYDIQLVAKWIEQILPFSLLLLVVFIRQHLQGFFVTIWIAAVMFKSNEIVKKQTALKGDRKVSLLAGISVAFILHVIGIYWWYRNDDILYPLVMLPPNPTPFWHAIFTILVNDILMRQVAMAFKCILLIYYKKGKGHNFRRQAQLLTLVEYTLLLYRALLPTPVWYRFFLNREYGSLFSSLTTGLYLTFKLTSVVEKVQSFISALKALSRKEIHYGVYATAEQVTAAGDLCAICQEKMHSPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRTFGDGSTSLFFQLF 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01040 486 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 22 486 IPR044235 GO:0061630|GO:1904294
Vifa1g01040 486 Pfam Zinc finger, C3HC4 type (RING finger) 423 467 - -
Vifa1g01040 486 SMART ring_2 425 462 IPR001841 -
Vifa1g01040 486 MobiDBLite consensus disorder prediction 157 190 - -
Vifa1g01040 486 CDD RING-HC_RNFT1-like 423 463 - -
Vifa1g01040 486 ProSitePatterns Zinc finger RING-type signature. 440 449 IPR017907 -
Vifa1g01040 486 MobiDBLite consensus disorder prediction 132 190 - -
Vifa1g01040 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 402 473 IPR013083 -
Vifa1g01040 486 SUPERFAMILY RING/U-box 417 467 - -
Vifa1g01040 486 ProSiteProfiles Zinc finger RING-type profile. 425 463 IPR001841 -
Vifa1g01040 486 MobiDBLite consensus disorder prediction 1 23 - -
Vifa1g01040 486 MobiDBLite consensus disorder prediction 71 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01040 Vifa-Chr1 172259199 172264318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01040 41 486 C3H Transcription Factor Family AT5G01960 62.528 0.0 547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01040 - K22379 nnu:104612968 587.03