Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01028 ATGGCAACTATTGTTGCAGAAGCATTTCTATCAGCTTTTGTGGAAGTGTTACTAGAAAAGATGATTTCTCACGAGTTTATCAACTTCTTTAGATGCAAAAAGCTCGATGTTTCACTCTTGGAAAAGCTAAAAACAACACTGTTGAGTCTTCAATCAATACTAAATGATGCTGAGGAGAAACAGATCACAAATCATACTGTCAAACAATGGGTGGAGAATTTGAGAGATGTTGTCTTTGAAGCTGATGATTTGTTTGACAAAATCAACACAGAGGCATTAAGATCCAAAGTGAAAGCTGAATATCAAAGGAAAACAGTAAGTGGTAAGGTGAAAAACTTATTTTCTTCTAGTTTCAAACAGTTTAATGGAATGATAAATTCTGAAATGCAAACACTATTTGAAAAATTGGAACACTTTGCACAAAAAAGACACGTTCTAGGATTGAAAGAAAGTGTTTCGCGCAGTGTTTGGCCTAGAACTCCGACAAGTTCTGTTGTAGATGAATCTACTATATATGGAAGAGATTTAGACAGAAAAAAACTTAAGGATTATTTACTGTCAGAAAATGGCAGTGATGTTGGTAAAGAAATAGGAGTAATTTCCATTGTTGGCATGGGAGGGATTGGTAAAACAACCCTTGCAAAACTGCTTTACAATGATTCAGAAGTAAACGAGAAATTTGATTTGAAAGGATGGGCATATATATCAAAAGATTTTGATATTGTTCAAGTAACTAAAACTCTTGTTGAATCAATTACTTCAAAAACAAATGATACAACTAACCTGAATACTCCGCATGCTGAATTTGTCACCTCAAAAAGACCTGATACAAGTGACCTGAATACTCTACAAGTGCAATTGATGCAAAGTTTAAACCATAAGAAATTTTTGCTTGTATTGGATGACATATGGGATCGGCGCTATATTGATTGGAACAATCTTAAGGACATCTTTAATGCCGGGAAAGTCGGAAGCAAGCTCATCATCACAACACGAGATGAAAGAGTTGCACTGGCCATGCAAACCTTTCTTCCGATTCACTATTTGACACCTCTAGGAAGAGACGAGTGCTGGTCTTTACTTGCCAAACATGCATTTGGAGCATGTAATTTCCAGCAACGGTCCAATCTAGAGGTGATTGGAAAAGAAATCGCTAAGAAATGTGATGGCTTACCATTAGCTGCAGTAGCAATTGGAGGTCTTCTTCGCATTAAATCGTCGGAGGATGACTGGAATAATGTATTAAAAAGTAATGTTTGGAGTTTGGAAAATGTTGAGGTGCAACCAGCTCTGTTTTTGAGCTATCATTATCTTCCGGCGCCTCTAAAGCGGTGTTTTGCTTATTGTTCAATTTTCCCCAAGAGCTCCAAGTTGAAAAAAAAGACGGTAGTTGAGTTGTGGATCGCAGAAGGCTTAGTACATCAGTCTAGAAGTCAGAAAAGTTGGAAAAAGGTAGGAGAGGAATACTTTGATGAACTAGTGTCAAGGTCACTAATACATCGACGACTTGATGATGGGAAAGCAAGCTTTGAAATGCACGACCTCATTCTTGATTTAGCTACAATGGTTTCATATCCGTATTGTATCATGTTGGATGAAGAGGAGCTGCATGAAAGGGTACGCCATTTGTCATTCAATAGAGGAAAATATGACTCGTACAATAAATTTAGGAAATTGTATGGACTAAAAGGTTTACGCACCTTCCTGGCCTTACCATTACAAGTATCATCACATTCTTGTTCCTTATCAAACAAGGTAGTGCGCGACTTTTTGCCAATAATGAAACAGTTACGAGTTTTGTCTATGCTAAACTACATAAACATTACTGAGTTGCCCGACTCTATTGGAAATTTGATATACCTGCGATACTTGAATCTCTCTTACACTGGGATTGAAAGGTTGCCTTCTGCAACATGCAAACTTTACAATCTGCAAACCTTGTTGTTGTTCCACTGTGGGAATCTCACTGAATTGCCTGAGGACATGGGAAAACTGATGAATCTACGCCACCTTGACATCAGAGGCACGCAATTGAAGGAGATGCCCGTACAAATTGCAAAACTAACAAATCTGCAAACTCTATCAAACTTTATTATCAGTAAACAACATGATGGATTGAAAATTGCAGAGCTGGGAAAATTTCCTGATCTACATGGGGAACTTTACATCTCAAACCTACAAAATGTTACGGAGGCCTGTGATGCTTTTCATGTAAATTTAAAAACGAAAGAAAAACTTGATTGTTTGGTACTGCAATGGGATCCACAAGACACTGCCACTATTCAAGGTTCACAAATTCAAAGTTCTGTACTAGAGCAACTGCAACCCTCAACAAATTTGAAGAATCTTGATATTTATGGATATGGTGGAACCAACTTTCCGAAATGGTTGGGCGATTCTTCCTTTGGTAACATGGTGACTATGTGCATTGGTACTTGTTACCATTGCTCACTACTGCCACCCGTTGGAAAATTACATTGTCTGAAAGCACTCAAAATTTATTGGATGAAGTCTATAAGGAGTGTTGGTGTTGAGTTCTATGGAAGTAGCTGTCCTTCATTCCAACCTTTCCCTTCCTTAGAGAGACTTGAATTTGTGGATATGCCAGAATGGGAGGATTGGAACTCGATTCCAGGTAAAACTAGAGAGTTTCCTAGTCTAAAATATCTATCAGTGGATAGATGTCCAAAACTCAAAGGAAACATACCAAGCACACTTCCATCCTTAACTGAACTTCACTTAACCAGATGTGATCTAATGTTGAAAGCAAGACATTCAGAAGATAATAGCAACATCATTTTGAGGCCATCAAATGTATCCACCCAACTGATGCTTTCTTTCAATTCTCTTCAAAAGTTGACATTAGACCAGTTTCCCTCTCTGACATCCTTCCCTGGAAATGGTCTACCAAAAACGTTACAATCTCTATCTCTACGTTACTGTGAGAACCTCGAATTCCTCCCTCACGAATCCTTGCACAATTACACATCACTTGAGCAACTGTCAATTGAATACAGTTGTAGTTCAATGACATCCTTTACCTTGGGCTCTCTCCCAGTGCTTAAAAGCCTATATATTAAAGGTTGCCAAAATCTCAAATCAATTTTCATTGCAACAGATGCATCAGAGAGCCTCTCATTTATTCAAAGTATCAAAATACAGTGTTGTGATGAATTGGATTCATTTTCCCCCGATGGATTGTGCACTCCTAACCTCGTTTGTTTCGGCGTGTATGGGTGTAACAAGCTTCTTACATTACCAAAATCAATGAACACTCTTGCTGGCCTTCAAGAATTGAGTGTTTTCAACCTTCCAAATCTACAACATTTTGCCGCAGAGGGATTACCATTCAATTTATGGAAACTTTCCGTCGGTGGGATTATGTGGAATACAAAGTATAGTTTGGAAGGTATGAATAATCTTTCTGTTTTGGAAATTGGAGGTTGTGAGATTGTGAATAGGTTCATGAGAATGGAAATGTCATTGCTACCGTCTTCTCTCATGTCCTTACACATCTATCAACTTGATGATATAGAATGCTTGGAAGGAAAGTGGCTCCACCATCTTACCTCTCTCAAAGACCTTGAGATTTCAGATGCTCCAAAGCTCAAATCATTGCCAGAACAAGGGTTTCCTTCCTCTCTTTCCGTAGTGAATATCTCTGACTGTCCATTGTTGGAAGAAACTTGGCGGACAAAAAAAGGAAAAGAGTGGCGTAAGATAGCCCGCATTCCATGCATACTTATCAACTACAAAATGATCTCATGA 3768 0.383 MATIVAEAFLSAFVEVLLEKMISHEFINFFRCKKLDVSLLEKLKTTLLSLQSILNDAEEKQITNHTVKQWVENLRDVVFEADDLFDKINTEALRSKVKAEYQRKTVSGKVKNLFSSSFKQFNGMINSEMQTLFEKLEHFAQKRHVLGLKESVSRSVWPRTPTSSVVDESTIYGRDLDRKKLKDYLLSENGSDVGKEIGVISIVGMGGIGKTTLAKLLYNDSEVNEKFDLKGWAYISKDFDIVQVTKTLVESITSKTNDTTNLNTPHAEFVTSKRPDTSDLNTLQVQLMQSLNHKKFLLVLDDIWDRRYIDWNNLKDIFNAGKVGSKLIITTRDERVALAMQTFLPIHYLTPLGRDECWSLLAKHAFGACNFQQRSNLEVIGKEIAKKCDGLPLAAVAIGGLLRIKSSEDDWNNVLKSNVWSLENVEVQPALFLSYHYLPAPLKRCFAYCSIFPKSSKLKKKTVVELWIAEGLVHQSRSQKSWKKVGEEYFDELVSRSLIHRRLDDGKASFEMHDLILDLATMVSYPYCIMLDEEELHERVRHLSFNRGKYDSYNKFRKLYGLKGLRTFLALPLQVSSHSCSLSNKVVRDFLPIMKQLRVLSMLNYINITELPDSIGNLIYLRYLNLSYTGIERLPSATCKLYNLQTLLLFHCGNLTELPEDMGKLMNLRHLDIRGTQLKEMPVQIAKLTNLQTLSNFIISKQHDGLKIAELGKFPDLHGELYISNLQNVTEACDAFHVNLKTKEKLDCLVLQWDPQDTATIQGSQIQSSVLEQLQPSTNLKNLDIYGYGGTNFPKWLGDSSFGNMVTMCIGTCYHCSLLPPVGKLHCLKALKIYWMKSIRSVGVEFYGSSCPSFQPFPSLERLEFVDMPEWEDWNSIPGKTREFPSLKYLSVDRCPKLKGNIPSTLPSLTELHLTRCDLMLKARHSEDNSNIILRPSNVSTQLMLSFNSLQKLTLDQFPSLTSFPGNGLPKTLQSLSLRYCENLEFLPHESLHNYTSLEQLSIEYSCSSMTSFTLGSLPVLKSLYIKGCQNLKSIFIATDASESLSFIQSIKIQCCDELDSFSPDGLCTPNLVCFGVYGCNKLLTLPKSMNTLAGLQELSVFNLPNLQHFAAEGLPFNLWKLSVGGIMWNTKYSLEGMNNLSVLEIGGCEIVNRFMRMEMSLLPSSLMSLHIYQLDDIECLEGKWLHHLTSLKDLEISDAPKLKSLPEQGFPSSLSVVNISDCPLLEETWRTKKGKEWRKIARIPCILINYKMIS 1255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01028 1255 SUPERFAMILY L domain-like 946 1241 - -
Vifa1g01028 1255 PANTHER DISEASE RESISTANCE PROTEIN RP 40 865 IPR044974 GO:0006952
Vifa1g01028 1255 Gene3D Ribonuclease Inhibitor 572 931 IPR032675 -
Vifa1g01028 1255 SUPERFAMILY L domain-like 510 919 - -
Vifa1g01028 1255 Gene3D - 434 522 IPR036388 -
Vifa1g01028 1255 PRINTS Disease resistance protein signature 199 214 - -
Vifa1g01028 1255 PRINTS Disease resistance protein signature 290 304 - -
Vifa1g01028 1255 PRINTS Disease resistance protein signature 1016 1032 - -
Vifa1g01028 1255 PRINTS Disease resistance protein signature 388 402 - -
Vifa1g01028 1255 Coils Coil 40 60 - -
Vifa1g01028 1255 Gene3D - 352 433 IPR042197 -
Vifa1g01028 1255 Gene3D - 18 142 - -
Vifa1g01028 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 449 IPR027417 -
Vifa1g01028 1255 Gene3D - 156 344 IPR027417 -
Vifa1g01028 1255 Gene3D Ribonuclease Inhibitor 937 1121 IPR032675 -
Vifa1g01028 1255 FunFam Probable disease resistance protein At1g63360 435 522 - -
Vifa1g01028 1255 FunFam Probable disease resistance protein At1g61300 155 343 - -
Vifa1g01028 1255 Pfam Rx N-terminal domain 9 103 IPR041118 -
Vifa1g01028 1255 Gene3D Ribonuclease Inhibitor 1122 1238 IPR032675 -
Vifa1g01028 1255 Pfam NB-ARC domain 195 416 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01028 Vifa-Chr1 170039906 170043673 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01028 562 694 WRKY Transcription Factor Family AT4G12020 32.609 8.28e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01028 - - tpra:123916222 2037.69