Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01022 ATGAGAAAGCCAGAGATTCGTAGTACGAAAAAGACCGACGTTGTTAACAAGAAGAAGCTTAGGAAAGGGTTATGGTCGCCGGAAGAAGATGAGAAACTTGTGAACTATATGGTAAGGAATAATGGACAAGGTTGTTGGAGTGATGTAGCAAGAAATGCTGGATTGGAAAGGTGTGGCAAAAGTTGTAGGTTAAGATGGATTAATTACTTGAGACCTGATCTTAAAAGAGGTGCTTTTTCAAATCAAGAAGAAGAACTCATCATTCATTTGCATTCCCTTCTTGGAAACAGATGGTCACAAATAGCAGCACGTTTACCTGGAAGAACAGACAATGAAATAAAAAACTTTTGGAATTCAACCATAAAGAAAAGACTCAAGAGTATGTCTTCTACTACAACAACAACCTCAACCTCGCCAAATGCAAGTGATGAATCTTCATCACTTGAGTCTAACAAAGATCTCAATATACTAGGGTTTTCACATGCAAATTACAACAATTACATGATGAACATGCCTATCTTCGCTTCATCGTCTTCGCCATCGATATTCGAAAACACGATTTTCAACACTATGAATATTGACACATTGCCTATGTTGCAGCATAGTGGATACTTAAACACTGCATTTACAGTGCCATGTTTTTCACAAAGTGGTGAAGTTGATATTAGAGATTCTTATATTGAAAATGGTGGAATACAAGGGGATGTGTGCAAGAGAGAGACCATCAGTATTGATTATACTTTTGATGACATGAACAGTATTCTTAGTAACTGCAATATTATTGACAGCAATAATGATAATAAAAATGGGGTAGCAGAGAATTTATTTCAAGAACAATTGAACTTGGGAGAGTGGGATTTTGAGGAGTTGATGAAAGATGTTTCCTCCTTTACTTCTCTTGATTATTCATTCTAA 915 0.3617 MRKPEIRSTKKTDVVNKKKLRKGLWSPEEDEKLVNYMVRNNGQGCWSDVARNAGLERCGKSCRLRWINYLRPDLKRGAFSNQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKSMSSTTTTTSTSPNASDESSSLESNKDLNILGFSHANYNNYMMNMPIFASSSSPSIFENTIFNTMNIDTLPMLQHSGYLNTAFTVPCFSQSGEVDIRDSYIENGGIQGDVCKRETISIDYTFDDMNSILSNCNIIDSNNDNKNGVAENLFQEQLNLGEWDFEELMKDVSSFTSLDYSF 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01022 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 70 IPR017930 -
Vifa1g01022 304 SUPERFAMILY Homeodomain-like 20 117 IPR009057 -
Vifa1g01022 304 Gene3D - 78 153 - -
Vifa1g01022 304 FunFam MYB transcription factor 19 76 - -
Vifa1g01022 304 SMART sant 75 123 IPR001005 -
Vifa1g01022 304 SMART sant 21 72 IPR001005 -
Vifa1g01022 304 Pfam Myb-like DNA-binding domain 76 119 IPR001005 -
Vifa1g01022 304 Pfam Myb-like DNA-binding domain 22 70 IPR001005 -
Vifa1g01022 304 CDD SANT 78 118 IPR001005 -
Vifa1g01022 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Vifa1g01022 304 ProSiteProfiles Myb-like domain profile. 17 70 IPR001005 -
Vifa1g01022 304 MobiDBLite consensus disorder prediction 128 149 - -
Vifa1g01022 304 Gene3D - 19 76 - -
Vifa1g01022 304 PANTHER MYB DOMAIN PROTEIN 55 15 233 - -
Vifa1g01022 304 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Vifa1g01022 304 FunFam Transcription factor MYB46 77 153 - -
Vifa1g01022 304 CDD SANT 25 70 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01022 Vifa-Chr1 169026751 169027777 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01022 1 131 MYB Transcription Factor Family AT5G12870 79.389 5.26e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g01022 Myb_DNA-binding 4.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01022 K09422 - gmx:100799410 305.834