Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01017 ATGGAGTTCTCAGTAGAAGCTTTAGAGGAAGATCTAAACAACATGAGAAAATATTATGGAAGTGGAAAAACAAAAGAAACATCATGGAGAAAATCACAGCTAAATGGTTTGCGAAACTTTGTCATAGAAAATGAAGAAAAAATCTTGAAGGCCCTTAAAAAGGACTTAGGGAAACATCATGTTGAAGCTTTCAGAGATGAGGTTGGAATTTTGAAGAAATCTATAGATTTGGCAATAAAATCCTTCAAACAATGGATGAATGGCAAAGAGGCTAAACTGCCACAAATAGCACTGCTTTCAAGTGCAGAAATTGTTGCTGAGCCTCTTGGTCTAGTTCTCATAATCTCATCATGGAACTTTCCATTTGGACTGTCCTTGGAGCCATTAATCGGAGCTGTAGCTGCTGGAAACACTATCGTTCTAAAACCTTCAGAGATGGCCCCAGTTTCTTCTTCTCTCCTAGCCACTGTTCTACCAAATTATTTGGACATTAATGGTATTAAGATTATTGAAGGGGGGCCAGAGGTTGGAGAGATACTCTTGCAACAAAAATGGAACAAGATTTTCTTCACAGGAAATGCGCGAGTCGGGAGGTTAGTTATGTCTGCAGCGGTGGAGAATTTGACTCCAGTAACTTTGGAGCTAGGTGGAAAATGTCCTGCACTGGTTGATTCACTATCAAATTGGGACAGAGAGGTCGCGGTGAAACGGATCTTGGGGGCAAAGTATGGATCTTGTGCAGGACAAGCATGTATAGCAATTGATTATGTTCTTGTAGAAAAGAGATTCAGTTCAACATTGATTGAATTAATGAAGGAAAGGATTAAGAAAATGTATGGAGATGATCCAAAAGGTTCTAACACCATTGCAAGGATAGTTAACAAACATCATTATAACAGAATCAAGGGTTTTCTCAATGATCCTATTGTCAAAGAATCTGTGGTTTTTGGTGGTTCAATGGAAGATGATGATGAACTATTTATTGAACCAACAATATTACTGGATCCACCACTTGAATCAGCAATTATGACAGAAGAAATATTTGGTCCCATTCTTCCTATAATTATTGTAGAGAAGATTGAAGATAGTATTGAGTTCATAAACTCAAAGCCTAAACCTCTAGCTATTTATGCATTCACAAAAAACAAAACTTTGCAGAGAAGATTGATATCTGAAACATCATCGGGAAGTATTGTATTCAACGATGCAATTCTACAGTATGCGGGGGATACCATACCATTTGGAGGAGTTGGTGAATCTGGATTTGGCAAGTATCATGGAAAGTTCTCATTTGATGAGTTCAGTCACTATAAGGCTGTGGTTAGGAGAAGTTACTACTCTGATTTTTGGTTCAGGTTTCCTCCATGGAATCTTAACAAGTTTCAACTACTTGAAGAAGCTTACAATTTAAACTACATTGGAATAGTTCTTGTTGTACTCGGCTTGAAGAGATCAAAACGTTCATTATATCAGGCTTGTAGTAACTGA 1488 0.3763 MEFSVEALEEDLNNMRKYYGSGKTKETSWRKSQLNGLRNFVIENEEKILKALKKDLGKHHVEAFRDEVGILKKSIDLAIKSFKQWMNGKEAKLPQIALLSSAEIVAEPLGLVLIISSWNFPFGLSLEPLIGAVAAGNTIVLKPSEMAPVSSSLLATVLPNYLDINGIKIIEGGPEVGEILLQQKWNKIFFTGNARVGRLVMSAAVENLTPVTLELGGKCPALVDSLSNWDREVAVKRILGAKYGSCAGQACIAIDYVLVEKRFSSTLIELMKERIKKMYGDDPKGSNTIARIVNKHHYNRIKGFLNDPIVKESVVFGGSMEDDDELFIEPTILLDPPLESAIMTEEIFGPILPIIIVEKIEDSIEFINSKPKPLAIYAFTKNKTLQRRLISETSSGSIVFNDAILQYAGDTIPFGGVGESGFGKYHGKFSFDEFSHYKAVVRRSYYSDFWFRFPPWNLNKFQLLEEAYNLNYIGIVLVVLGLKRSKRSLYQACSN 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01017 495 SUPERFAMILY ALDH-like 13 457 IPR016161 GO:0016491
Vifa1g01017 495 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 217 420 IPR016163 GO:0016620
Vifa1g01017 495 PIRSF ALDH 1 477 IPR012394 GO:0006081
Vifa1g01017 495 PANTHER ALDEHYDE DEHYDROGENASE 6 482 IPR012394 GO:0006081
Vifa1g01017 495 Pfam Aldehyde dehydrogenase family 23 440 IPR015590 GO:0016491
Vifa1g01017 495 FunFam Aldehyde dehydrogenase 217 420 - -
Vifa1g01017 495 FunFam Aldehyde dehydrogenase 16 220 - -
Vifa1g01017 495 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 16 438 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01017 Vifa-Chr1 168348592 168351049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01017 1 484 Aldehyde Dehydrogenase Gene Family AT4G36250 53.608 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01017 K00128 - gmx:100798020 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01017 1 168348592 168351049 Vifa1g01017 1 168348592 168351049 ECH