Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01016 ATGGCAACAACCTATCACCAACCCACCACAATAGAAGAAGTCCGAACCCTATGGATCGGCGATTTACAATACTGGGTCGACGAGAACTATCTCACAAACTGCTTCTCCCACACCGGCGAAGTCATCTCCATCAAAATCATCCGCAACAAAATCACCGGCCAACCAGAAGGCTACGGTTTCGTCGAATTCGTCTCCCACGCCGCCGCAGAGCGAGTTCTTCAAAGCTACAACGGAACTCAAATGCCGGGAACCGAACAAACGTTCCGGTTAAACTGGGCTTCGTTCGGTATCGGTGAACGCCGTCCGGATGCCGGTCCCGATCACTCGATTTTCGTTGGGGATCTTGCTCCGGATGTTACTGATTATCTTTTGCAAGAGACGTTTCGGACTCATTATAGTTCGGTTCGTGGTGCGAAGGTTGTGACTGACCCCAATACGGGGAGGTCTAAGGGTTATGGGTTTGTTAAATTTGCTGATGAGAGTGAGAGGAATCGGGCTATGTCTGAAATGAATGGGGTTTATTGTTCTACTAGGCCGATGAGGATTAGTGCTGCTACGCCCAAGAAAACTACTGCTTATCCGCAGAATCCCTATGCGGCTGTTGGTGCTGCTGCTGTTGTTGCTCCTGCACCTGCTCCTAAAGCAATATATCCAGTTCCAGCATACACTGCCCCACTGAATACAGTTCCACCAGAATATGATGCAAACAATACTACCGTTTATGTTGGTAATTTGGATCTTAATGTCTCAGACGAGGAGCTGAAGCAACATTTTCTGCAATTTGGAGAGGTTGTTTCTGTCAAAGTACATCCCGGCAAAGCATGTGGTTTCGTTCAATTTGGGGCTAGAGCATCTGCTGAAGAAGCCATTCAGAAGATGCAGGGAAAGATAATAGGTCAACAAGTGGTCCGAGTTTCTTGGGGCAGGCCCCTAACAGCTAGACAGGACGTACCTGGTGGCTGGGGACAACAGGTGGATCAAAATCAATGGAGTGCATACTATGGGTATGGACAGCAGGGTTATGAAGCTTATGCATATGGGGCTGCTCAGGATCCTTCAATGTATGCATATGCTGGATATGCTGGCTATGCACAATATCCCCAACAGGTTGAAGGTGTCCAAGACATATCAGCTATGTCGGTGCCTACAATGGAACCAAGGGAGGAGTTGTATGATCCTCTGGCAATGCCTGATGTTGATAAGTTAAATGCTGCATATCTCTCAGTACACGGAAATGCAATTTTAGGGCGGTCTCTCTGGCACAAGACCTCATCCTTGCAGCAAGCTTAG 1290 0.4806 MATTYHQPTTIEEVRTLWIGDLQYWVDENYLTNCFSHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERVLQSYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYSSVRGAKVVTDPNTGRSKGYGFVKFADESERNRAMSEMNGVYCSTRPMRISAATPKKTTAYPQNPYAAVGAAAVVAPAPAPKAIYPVPAYTAPLNTVPPEYDANNTTVYVGNLDLNVSDEELKQHFLQFGEVVSVKVHPGKACGFVQFGARASAEEAIQKMQGKIIGQQVVRVSWGRPLTARQDVPGGWGQQVDQNQWSAYYGYGQQGYEAYAYGAAQDPSMYAYAGYAGYAQYPQQVEGVQDISAMSVPTMEPREELYDPLAMPDVDKLNAAYLSVHGNAILGRSLWHKTSSLQQA 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01016 429 CDD RRM2_SECp43_like 107 186 - -
Vifa1g01016 429 SMART rrm1_1 239 306 IPR000504 GO:0003723
Vifa1g01016 429 SMART rrm1_1 109 183 IPR000504 GO:0003723
Vifa1g01016 429 SMART rrm1_1 16 91 IPR000504 GO:0003723
Vifa1g01016 429 SUPERFAMILY RNA-binding domain, RBD 6 83 IPR035979 GO:0003676
Vifa1g01016 429 Gene3D - 97 196 IPR012677 -
Vifa1g01016 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 95 IPR000504 GO:0003723
Vifa1g01016 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 238 310 IPR000504 GO:0003723
Vifa1g01016 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 187 IPR000504 GO:0003723
Vifa1g01016 429 Gene3D - 14 94 IPR012677 -
Vifa1g01016 429 FunFam polyadenylate-binding protein RBP45 222 317 - -
Vifa1g01016 429 SUPERFAMILY RNA-binding domain, RBD 101 198 IPR035979 GO:0003676
Vifa1g01016 429 FunFam Polyadenylate-binding protein RBP47B 14 94 - -
Vifa1g01016 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 85 IPR000504 GO:0003723
Vifa1g01016 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 240 303 IPR000504 GO:0003723
Vifa1g01016 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 175 IPR000504 GO:0003723
Vifa1g01016 429 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 8 313 - -
Vifa1g01016 429 Gene3D - 226 316 IPR012677 -
Vifa1g01016 429 CDD RRM1_SECp43_like 16 96 - -
Vifa1g01016 429 SUPERFAMILY RNA-binding domain, RBD 220 339 IPR035979 GO:0003676
Vifa1g01016 429 FunFam Polyadenylate-binding protein RBP47B 96 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01016 Vifa-Chr1 168344079 168347975 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01016 16 316 Eukaryotic Initiation Factors Gene Family AT1G71770 25.490 1.60e-23 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01016 - - tpra:123894020 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01016 1 168344079 168347975 Vifa1g01016 1 168344079 168347975 ECH