Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01014 ATGCTCCTTGGACTTAGAGATAGTTCTTACTTTTATAATTCACTTGTTGATAGAAGAAATGTTCTATCTATTTACATGCACCACTCTTTTATGGAGAAGGAGCCAAAACGTAAACGTAACAAGAAGAGTAAAGTTGGAGAAAACACTGCAAATGGAATGAACAAAAAGAGGAAGCTTAGTGAAAAACAAATGATTTTGTTGGAAGAACACTTTGGGAATGAACACAAACTTGAGTCAGAAAGAAAAGATAAACTTGCAATGGAACTTGGTTTGGATGTTCCTTCTATGGTGCTCTTGAAATTTTTTGTTCACTTTAATATTGTTATTGTAATTTTAGCTCTACATGTCTTGTTGCTTATTAATTAA 366 0.3224 MLLGLRDSSYFYNSLVDRRNVLSIYMHHSFMEKEPKRKRNKKSKVGENTANGMNKKRKLSEKQMILLEEHFGNEHKLESERKDKLAMELGLDVPSMVLLKFFVHFNIVIVILALHVLLLIN 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01014 121 MobiDBLite consensus disorder prediction 32 54 - -
Vifa1g01014 121 Gene3D - 45 96 - -
Vifa1g01014 121 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 32 92 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01014 Vifa-Chr1 168139184 168140283 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01014 20 101 Homeobox Transcription Factor Family AT2G18550 47.727 1.26e-17 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vifa1g01014 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01014 K09338 - gmx:100809616 87.4261