Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01003 ATGGTGGCTGATAGGAGGCACCAATGTCCAACACTAGCACAACTTCATCTAAGAACTAACCTTTCATCCTCAAATGCAGTGTTTGTTCCATCACCATCAGAGAAAAACTTTGCAAGCTTTGCAACTGATTTTCTGATGGGTGGAGTTTCTGCAGCAGTGTCGAAATCTGCAGCTGCTCCTATCGAACGCGTGAAGCTTCTGATTCAAAACCAAGATGAGTTGATTAAGGCTGGTAGGCTTTCTGAACCTTACAAAGGAATTGGAGATTGTTTTGGTAGAACAATCAAAGATGAAGGCTTTGCTTCACTTTGGAGAGGAAACACTGTCAATGTTATTCGTTATTTCCCAACGCAGGCCTTCAACTTTGCATTCAAAGACTATTTCAAGAAGCTATTTAACTTCAAGCAAGAGAGAGATGGATATTGGAAAGTGTTTGCAGGAAATATTGCATCTGGTGCAGCAGCAGGAGCTTCATCTTCAGTCTTTGTTTACTCATTGGATTACGCTCGAACGCGACTTGCTAGTGACGCCAAGACCGTGAAGAAAGGAGGAGAGAGACAATTCAATGGCTTGATTGATGTCTACAAGAAGACATATCAATCTGATGGTATTGCTGGTCTTTATCGCGGTTTCAATGTTTCGATTGTTGGAATCACTGTTTACCGCGGATTGTATTTCGGAATGTATGATTCTCTTAAACCAGTGCTCTTAGTAGGAACATTTCAGGACAATTTCCTTGCTAGTTTTGTTCTAGGATGGATAGTTACAGTTGGAGCTAGTGTTGCATCTTACCCTTTCGACACGGTTCGTAGAAGAATGATGATGACATCAGGCGAAGCTGTAAAATACAAGAATTCAATGGATGCTTTCAAACAAATTGTGAAAAGTGAAGGTCCAAAATCTCTCTTCAAAGGTGCTGGTGCAAACATACTTAGAGCAGTTGCTGGTGCTGGTGTGCTTGCAAGTTATGATAAACTTCAGGTGATTATGTTGGGAAAGAAATATGGTTCTGGTGGAGCTTAA 1023 0.4115 MVADRRHQCPTLAQLHLRTNLSSSNAVFVPSPSEKNFASFATDFLMGGVSAAVSKSAAAPIERVKLLIQNQDELIKAGRLSEPYKGIGDCFGRTIKDEGFASLWRGNTVNVIRYFPTQAFNFAFKDYFKKLFNFKQERDGYWKVFAGNIASGAAAGASSSVFVYSLDYARTRLASDAKTVKKGGERQFNGLIDVYKKTYQSDGIAGLYRGFNVSIVGITVYRGLYFGMYDSLKPVLLVGTFQDNFLASFVLGWIVTVGASVASYPFDTVRRRMMMTSGEAVKYKNSMDAFKQIVKSEGPKSLFKGAGANILRAVAGAGVLASYDKLQVIMLGKKYGSGGA 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01003 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 38 131 IPR018108 -
Vifa1g01003 340 PRINTS Adenine nucleotide translocator signature 40 52 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vifa1g01003 340 PRINTS Adenine nucleotide translocator signature 248 264 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vifa1g01003 340 PRINTS Adenine nucleotide translocator signature 143 156 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vifa1g01003 340 PRINTS Adenine nucleotide translocator signature 84 105 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vifa1g01003 340 PRINTS Adenine nucleotide translocator signature 117 129 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vifa1g01003 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 143 235 IPR018108 -
Vifa1g01003 340 FunFam ADP,ATP carrier protein, mitochondrial 41 336 - -
Vifa1g01003 340 Pfam Mitochondrial carrier protein 243 330 IPR018108 -
Vifa1g01003 340 Pfam Mitochondrial carrier protein 142 236 IPR018108 -
Vifa1g01003 340 Pfam Mitochondrial carrier protein 39 134 IPR018108 -
Vifa1g01003 340 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 32 339 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vifa1g01003 340 PRINTS Mitochondrial carrier protein signature 158 176 IPR002067 GO:0055085
Vifa1g01003 340 PRINTS Mitochondrial carrier protein signature 106 126 IPR002067 GO:0055085
Vifa1g01003 340 PRINTS Mitochondrial carrier protein signature 43 56 IPR002067 GO:0055085
Vifa1g01003 340 PRINTS Mitochondrial carrier protein signature 208 226 IPR002067 GO:0055085
Vifa1g01003 340 PRINTS Mitochondrial carrier protein signature 56 70 IPR002067 GO:0055085
Vifa1g01003 340 PRINTS Mitochondrial carrier protein signature 252 274 IPR002067 GO:0055085
Vifa1g01003 340 SUPERFAMILY Mitochondrial carrier 36 325 IPR023395 -
Vifa1g01003 340 Gene3D Mitochondrial carrier domain 41 336 IPR023395 -
Vifa1g01003 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 243 329 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01003 Vifa-Chr1 166685749 166687183 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01003 8 340 Antiporters AT5G13490 76.946 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01003 K05863 - gmx:100800843 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01003 1 166685749 166687183 Vifa1g01003 1 166685749 166687183 ECH