Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01002 ATGAATGGTTCTGGTTTAGGTGGTGGGGGTATTTTGGACCTTAAATCTCCATTTCATAAGCATGGTAAACACCATATGAATATGATGACTGGTTTGGAAAATGATAACAAAGTGGGTCTAATCGACGCGAAAAATTTGAATTTCGGTAAAGGAAAAGCAATTGCTAGCTCGAATGATAATGACATGAGCGAAGACGATGAGGTGGAAGATGGGAATTGTGGGAATTTTTTTGGAGGTGGTAAAGGTAAGAAGGGGTCTTCTCCATGGCAGCGAATGAAGTGGACGGATGATGTGGTTGGGCTGCTTATAGCGGTGGTGAGTTGTGTTGGTGACGATGGGACGATTGGTGGTGGCGATGGCGTTAAGAGGAAGTCGGCTGTTTTACAGAAGAAGGGTAAGTGGAAAACTGTTTCCAAGATAATGATAAGTAAGGGTTGTCATGTGTCGCCGCAACAATGTGAGGATAAGTTTAATGACTTGAATAAGAGGTATAAGAGATTGAATGAGATACTTGGTAGGGGGACTTGTTGTCAAGTGGTTGAGAATCCGGCTTTGATGGATTCGATGACGAATTTGTCTGGTAAGGTGAAAGATGATGTTAGGAAGATATTGAGTTCGAAACATTTGTTTTATAAGGAAATGTGTGCTTACCATAATGGACAAAGGGTACCGAGTAGCCATGATCTTGACTTGCATGGTTATTCGTTGGAACACGGGAATGACTCGAGAGATAACGATGGGTCTGAGGATGATGATGACGATAACAATGAAAGTGAGGACGATGAGATGGATGATCAGATTAATATTAATGCACATGGGGATGGAGGGAGGAGGACGGAGGAGTTTTTTCGTGAACGAGATAAATTAAGTGAGGAGGATGGCCATGGCCACGGCCACTCTTGGCCGCCATCTATTAGGATGAAGAAACTTGAGGTTGAAATGGCAAAGGTTTTTCAAGACCCTGCAAAGTCACCGTGGGAGCGAAGAGAATGGATCAAGACACAGCTGTTGCAGCTTCAAGAGCAAAATGCTGAGTACCAAGCCAAGGCTCTTGAACTTCAGAAACAACGGTTTAAGTGGTTGAGATACTGCAGCAAGAAGGATAGGGAGATGGAGAAGATGAAGATGGAAAACAAGCGGATGAAATTGGAAAATGACCGCAGAATCTTGAAACTGAAACAGAGAGAGCAGGAGGCAGATTTCAGTAGGTCCGAGATGTCCTTAGACGCTGCCACCCTTGGTATCAACAACGCGCAAGGGAGAGAACCTATCAACTTGGCTAGACAACAGTAG 1293 0.4393 MNGSGLGGGGILDLKSPFHKHGKHHMNMMTGLENDNKVGLIDAKNLNFGKGKAIASSNDNDMSEDDEVEDGNCGNFFGGGKGKKGSSPWQRMKWTDDVVGLLIAVVSCVGDDGTIGGGDGVKRKSAVLQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNEILGRGTCCQVVENPALMDSMTNLSGKVKDDVRKILSSKHLFYKEMCAYHNGQRVPSSHDLDLHGYSLEHGNDSRDNDGSEDDDDDNNESEDDEMDDQININAHGDGGRRTEEFFRERDKLSEEDGHGHGHSWPPSIRMKKLEVEMAKVFQDPAKSPWERREWIKTQLLQLQEQNAEYQAKALELQKQRFKWLRYCSKKDREMEKMKMENKRMKLENDRRILKLKQREQEADFSRSEMSLDAATLGINNAQGREPINLARQQ 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01002 430 Gene3D - 94 166 - -
Vifa1g01002 430 PANTHER F16F4.11 PROTEIN-RELATED 21 403 - -
Vifa1g01002 430 Coils Coil 329 356 - -
Vifa1g01002 430 MobiDBLite consensus disorder prediction 246 264 - -
Vifa1g01002 430 MobiDBLite consensus disorder prediction 228 278 - -
Vifa1g01002 430 Pfam Myb/SANT-like DNA-binding domain 91 216 IPR044822 -
Vifa1g01002 430 MobiDBLite consensus disorder prediction 231 245 - -
Vifa1g01002 430 Coils Coil 364 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01002 Vifa-Chr1 166650384 166651676 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa1g01002 Myb_DNA-bind_4 1.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01002 - - psat:127087226 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01002 1 166650384 166651676 Vifa1g01002 1 166650384 166651676 ECH