Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00997 ATGCTTAATGATGCTTGTGAGAATGATTATAAAGCGGTTGCAGTTGAGTTCGATACACGGATGAATCCTGAATTCGGTGATCCCAATGATAATCATGTTGGTATCAATTTAGGTAGTATAGTATCTACTAAAATTATCAATGTTTCTGATGTTGGTGTTTCACTTAAAGATGGTTTTGTTCACCATGCTTGGATTCATTATGATGGTCCTCGAAAGAGAATGGACGTTCGTCTTGGACTTCCCAACGATGAAGTTTATCCTAGCAAGCCTATCTTCTCGGAGTTAATGGATCTTTCGCCTTATTTGAACGAGTATATGTTTGTAGGATTCTCAGCTTCAACGGGAAACCACACACAGATTCATAATATACTTTCTTGGAACTTTACTTCGACTAGTCAAGCTTTTCTTCGCTACCCTTCCTCTGAAACATGTCAAGGTAAGATCTTGCTGCAGAATACTACAGAAACAACAGAAGTAACCGACAAGTCTAATAGGAATAAAACTCCGCGAAGCTTTTTGATTTTTGTGGCTTCTGTAGTATTGGCTTTAGCTGTTTTAGTTGGTTTTTACTTTATCAGTAAGCATAGAAAAAGTGCTTCTAAATCGAAGACTTCGATAGAGGATGAGATTCATCGGCCAAGGCCTCCCAACAAACCGCGCAGGTTCAGTTTTTCTGCAATTTCCTCTGCTACTAGATCATTCAGTGAGATAGAGATACTTGGAAGTGATATTAGAGGAGTATACTACAGAGGAAGGCTTGGTACTAATGGAAGCCAAGTAGCTGTGAAAAGATTCTCAGCTCAGTTTCTCAGCACACACGGGTCGGATAAGAAGCGTTTATTGAAAGAAATCAAAGTCATTAGCCATGTTCGTCACCCGAATTTACTTCCTATAAGAGGCTGGTGTCAAGACAACAATGAAATCATCGCAGTCTATGATTTTGTCCCGAACGGAAGCCTCGATAAATGGCTGTTTGGAGCGGGAGTTCTTCCGTGGACACGACGGTTCAAAGTCGTCAAAGACGTAGCTGACGGATTGAGTTTCTTGCACACTAAGCAACTAGCTCACAAGAACATGAAATGCAGCAGCGTGTTTTTGGATGTTAGCTTCAGAGCTGTTTTGGGAGATTTCGGATTTATTCTAATGGGAGCAGAATCAAAACAGTTTGAATCAATAGTGTGTAATAGTGCCGATGTATTTGAGTTTGGCGTGATTGTGTTGGAAGTGATAGGTGGAAGGCCAAGGGTGGAGGAAGTGGAGGAAGGAAGATCAGAAGAGAGGAACTTATTGGATTTTGCATGGAACTTGCATGAAACTAATGAGAAAGTGAAGCTTGTTGATAGGAGAATGGGATCGTTGATCAATTTGGAGCAAGCGATTCGTGTAATGGAAATCGGTTTGCTTTGTACTTTGAATGAGAACAAAGGAAGACCTTCCATGGAAGAAGTTGTGGAGCTTCTTCATAACATGGAGAAGCCTCTTCCTGAATTGCCAAGAACTAGACCTGTTGCTTTGTTTCCTTATAATAGTGCCAACACTGGGCTTTGCAATAATTACTCTTGCACTTTGAAGCTGTGA 1578 0.4075 MLNDACENDYKAVAVEFDTRMNPEFGDPNDNHVGINLGSIVSTKIINVSDVGVSLKDGFVHHAWIHYDGPRKRMDVRLGLPNDEVYPSKPIFSELMDLSPYLNEYMFVGFSASTGNHTQIHNILSWNFTSTSQAFLRYPSSETCQGKILLQNTTETTEVTDKSNRNKTPRSFLIFVASVVLALAVLVGFYFISKHRKSASKSKTSIEDEIHRPRPPNKPRRFSFSAISSATRSFSEIEILGSDIRGVYYRGRLGTNGSQVAVKRFSAQFLSTHGSDKKRLLKEIKVISHVRHPNLLPIRGWCQDNNEIIAVYDFVPNGSLDKWLFGAGVLPWTRRFKVVKDVADGLSFLHTKQLAHKNMKCSSVFLDVSFRAVLGDFGFILMGAESKQFESIVCNSADVFEFGVIVLEVIGGRPRVEEVEEGRSEERNLLDFAWNLHETNEKVKLVDRRMGSLINLEQAIRVMEIGLLCTLNENKGRPSMEEVVELLHNMEKPLPELPRTRPVALFPYNSANTGLCNNYSCTLKL 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00997 525 FunFam Lectin-domain containing receptor kinase A4.2 315 495 - -
Vifa1g00997 525 SUPERFAMILY Concanavalin A-like lectins/glucanases 12 234 IPR013320 -
Vifa1g00997 525 ProSitePatterns Legume lectins beta-chain signature. 13 19 IPR019825 -
Vifa1g00997 525 MobiDBLite consensus disorder prediction 202 222 - -
Vifa1g00997 525 Gene3D Phosphorylase Kinase; domain 1 204 314 - -
Vifa1g00997 525 PANTHER - 8 489 - -
Vifa1g00997 525 Gene3D Transferase(Phosphotransferase) domain 1 315 496 - -
Vifa1g00997 525 Gene3D - 9 175 - -
Vifa1g00997 525 CDD lectin_legume_LecRK_Arcelin_ConA 1 131 IPR001220 GO:0030246
Vifa1g00997 525 MobiDBLite consensus disorder prediction 202 216 - -
Vifa1g00997 525 Pfam Legume lectin domain 8 134 IPR001220 GO:0030246
Vifa1g00997 525 SUPERFAMILY Protein kinase-like (PK-like) 210 487 IPR011009 -
Vifa1g00997 525 Pfam Protein tyrosine and serine/threonine kinase 238 380 IPR001245 GO:0004672|GO:0006468
Vifa1g00997 525 ProSiteProfiles Protein kinase domain profile. 234 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00997 Vifa-Chr1 166426078 166427655 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00997 1 506 Receptor kinase-like Gene Family AT5G55830 31.261 7.11e-78 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vifa1g00997 PK_Tyr_Ser-Thr 5.3e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00997 - - lja:Lj2g3v2196570.1 863.603