Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00996 ATGCCTTCCATAACCTTTTTCCTCCTCATATTCTCCTTTTTCTTCAATCTAGTTTTTTCATCTAGTGAAGTTCCAATCAATGTAACCAAACACTTCTCCTTCAAAGATTTCAGTTTCACCAAAAACTCAAGATTAGTCCATGATGTAAAGCTTCTAGGAAGTGCAAGATTCTCAAATGAAAAAGGTTCACTTCAAATCCCAAATGAATCACAAGAAACAGGTATAAGACATCAAGCAGGTAGAGGTTTATATTCCTTCCCGATTCGTCTGTTAGATCCGATCACCAAAACTCCGGCTTCTTTTCAAACCACCTTTTCATTTCAGCTCAATAATTCAACTAGTAGTGCTTCTGATTTAACTGATAATGGTGGTGGCAGTGGACTCACCTTCATTATTGTACCTGATGAATTCACTGTTGGAAGGCCTGGACCTTGGCTTGCTATGCTTAATGATGCTTGTGAGAATGATTATAAAGCGGTTGCAGTTGAGTTCGATACACGGATGAATCCTGAATTCGGTGATCCCAATGATAATCATGTTGGTATCAATTTAGGTAGTATAGTATCTACTAAAATTATCAATGTTTCTGATGTTGGTGTTTCACTTAAAGATGGTTTTGTTCACCATGCTTGGATTCATTATGATGGTCCTCGAAAGAGAATGGACGTTCGTCTTGGACTTCCCAACGATGAAGTTTATCCTAGCAAGCCTATCTTCTCGGAGTTAATGGATCTTTCGCCTTATTTGAACGAGTATATGTTTGTAGGATTCTCAGCTTCAACGGGAAACCACACACAGATTCATAATATACTTTCTTGGAACTTTACTTCGACTAGTCAAGCTTTTCTTCGCTACCCTTCCTCTGAAACATGTCAAGGTAAGATCTTGCTGCAGAATACTACAGAAACAACAGAAGTAACCGACAAGTCTAATAGGAATAAAACTCCGCGAAGCTTTTTGATTTTTGTGGCTTCTGTAGTATTGGCTTTAGCTGTTTTAGTTGGTTTTTACTTTATCAGTAAGCATAGAAAAAGTGCTTCTAAATCGAAGACTTCGATAGAGGATGAGATTCATCGGCCAAGGCCTCCCAACAAACCGCGCAGGTTCAGTTTTTCTGCAATTTCCTCTGCTACTAGATCATTCAGTGAGATAGAGATACTTGGAAGTGATATTAGAGGAGTATACTACAGAGGAAGGCTTGGTACTAATGGAAGCCAAGTAGCTGTGAAAAGATTCTCAGCTCAGTTTCTCAGCACACACGGGTCGGATAAGAAGCGTTTATTGAAAGAAATCAAAGTCATTAGCCATGTTCGTCACCCGAATTTACTTCCTATAAGAGGCTGGTGTCAAGACAACAATGAAATCATCGCAGTCTATGATTTTGTCCCGAACGGAAGCCTCGATAAATGGCTGTTTGGAGCGGGAGTTCTTCCGTGGACACGACGGTTCAAAGTCGTCAAAGACGTAGCTGACGGATTGAGTTTCTTGCACACTAAGCAACTAGCTCACAAGAACATGAAATGCAGCAGCGTGTTTTTGGATGTTAGCTTCAGAGCTGTTTTGGGAGATTTCGGATTTATTCTAATGGGAGCAGAATCAAAACAGTTTGAATCAATAGTGTGTAATAGTGCCGATGTATTTGAGTTTGGCGTGATTGTGTTGGAAGTGATAGGTGGAAGGCCAAGGGTGGAGGAAGTGGAGGAAGGAAGATCAGAAGAGAGGAACTTATTGGATTTTGCATGGAACTTGCATGAAACTAATGAGAAAGTGAAGCTTGTTGATAGGAGAATGGGATCGTTGATCAATTTGGAGCAAGCGATTCGTGTAATGGAAATCGGTTTGCTTTGTACTTTGAATGAGAACAAAGGAAGACCTTCCATGGAAGAAGTTGTGGAGCTTCTTCATAACATGGAGAAGCCTCTTCCTGAATTGCCAAGAACTAGACCTGTTGCTTTGTTTCCTTATAATAGTGCCAACACTGGGCTTTGCAATAATTACTCTTGCACTTTGAAGCTGTGA 2019 0.4022 MPSITFFLLIFSFFFNLVFSSSEVPINVTKHFSFKDFSFTKNSRLVHDVKLLGSARFSNEKGSLQIPNESQETGIRHQAGRGLYSFPIRLLDPITKTPASFQTTFSFQLNNSTSSASDLTDNGGGSGLTFIIVPDEFTVGRPGPWLAMLNDACENDYKAVAVEFDTRMNPEFGDPNDNHVGINLGSIVSTKIINVSDVGVSLKDGFVHHAWIHYDGPRKRMDVRLGLPNDEVYPSKPIFSELMDLSPYLNEYMFVGFSASTGNHTQIHNILSWNFTSTSQAFLRYPSSETCQGKILLQNTTETTEVTDKSNRNKTPRSFLIFVASVVLALAVLVGFYFISKHRKSASKSKTSIEDEIHRPRPPNKPRRFSFSAISSATRSFSEIEILGSDIRGVYYRGRLGTNGSQVAVKRFSAQFLSTHGSDKKRLLKEIKVISHVRHPNLLPIRGWCQDNNEIIAVYDFVPNGSLDKWLFGAGVLPWTRRFKVVKDVADGLSFLHTKQLAHKNMKCSSVFLDVSFRAVLGDFGFILMGAESKQFESIVCNSADVFEFGVIVLEVIGGRPRVEEVEEGRSEERNLLDFAWNLHETNEKVKLVDRRMGSLINLEQAIRVMEIGLLCTLNENKGRPSMEEVVELLHNMEKPLPELPRTRPVALFPYNSANTGLCNNYSCTLKL 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00996 672 MobiDBLite consensus disorder prediction 349 369 - -
Vifa1g00996 672 ProSitePatterns Legume lectins beta-chain signature. 160 166 IPR019825 -
Vifa1g00996 672 SUPERFAMILY Protein kinase-like (PK-like) 357 634 IPR011009 -
Vifa1g00996 672 Gene3D Transferase(Phosphotransferase) domain 1 462 643 - -
Vifa1g00996 672 Gene3D - 28 282 - -
Vifa1g00996 672 ProSiteProfiles Protein kinase domain profile. 381 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00996 672 Pfam Protein tyrosine and serine/threonine kinase 385 527 IPR001245 GO:0004672|GO:0006468
Vifa1g00996 672 Gene3D Phosphorylase Kinase; domain 1 351 461 - -
Vifa1g00996 672 Pfam Legume lectin domain 31 281 IPR001220 GO:0030246
Vifa1g00996 672 FunFam Lectin-domain containing receptor kinase A4.2 462 642 - -
Vifa1g00996 672 CDD lectin_legume_LecRK_Arcelin_ConA 37 278 IPR001220 GO:0030246
Vifa1g00996 672 PANTHER - 62 636 - -
Vifa1g00996 672 FunFam Putative L-type lectin-domain containing receptor kinase S.7 isoform A 29 285 - -
Vifa1g00996 672 SUPERFAMILY Concanavalin A-like lectins/glucanases 33 279 IPR013320 -
Vifa1g00996 672 MobiDBLite consensus disorder prediction 349 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00996 Vifa-Chr1 166425637 166427655 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00996 9 653 Receptor kinase-like Gene Family AT5G55830 31.014 4.57e-94 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa1g00996 Lectin_legB 1.9e-55 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00996 - - gmx:100781464 1054.66