Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00992 ATGAATTCTCAACCCTACTTCTCCAACAACTTGAATGGTTATTATTTTGACCTAAATAGCCCTCCATTCTATAATTTTCCATCTAGTTTCCATCAAGACAACATATCTTTCTCATCTTCATCTCAATCATCTCCCACTCCAAGAGAAGCTCTTCCTTTACTTAACCTAAACCCTACAAAACATGAAGATCTTCTTCTAGAATCTTCTTTTTCTTCCATGGAAATGATCAACATGAAAGAGAAAGAACAACTAAGTATATCATCAAATTCTCTAGATGATGTTGATGATGCTGTTACTGTTGCTTTACATCTAGGGCTTCCAAGTATAGCTTCATCTGATTTGGCTTCTGAGAAAGAAGATGACGATGAAAAAGTTGTAACTCTTGCTTCTGAGTGTCCACCAAGTAAAATTAATAGGGGTCAGTATTGGATCCCTACCCCTGCTCAGATTCTTATTGGTCCTACACAGTTTTCATGTCCTCTTTGTTTCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCACAATATAGAAAAGGACCAGAATCTCTTCGAGGAACACAACCAACAGCCATGTTAAGACTCCCATGTTATTGTTGTGCATCCGGATGCAAGAACAACATTGATCATCCAAGAGCAAAGCCACTAAAAGATTTCAGAACACTTCAAACACATTACAAGAGAAAGCATGGAATAAAACCCTTCATGTGTAGAAAGTGTTGCAAAGCATTTGCAGTGAGAGGTGATTGGAGAACTCATGAGAAAAACTGTGGGAAACTTTGGTATTGTTGTTGTGGGTCAGATTTTAAACACAAAAGATCACTTAAAGATCATATAAAGGCATTTGGAAATGGACATAAAGCTTATGGAATTGATGATCAAGATGGCTCTGAAATTGAGCAAGAAAATGAATCTTTTCAGTCATAG 945 0.3704 MNSQPYFSNNLNGYYFDLNSPPFYNFPSSFHQDNISFSSSSQSSPTPREALPLLNLNPTKHEDLLLESSFSSMEMINMKEKEQLSISSNSLDDVDDAVTVALHLGLPSIASSDLASEKEDDDEKVVTLASECPPSKINRGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCASGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCCCGSDFKHKRSLKDHIKAFGNGHKAYGIDDQDGSEIEQENESFQS 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00992 314 ProSitePatterns Zinc finger C2H2 type domain signature. 159 179 IPR013087 -
Vifa1g00992 314 SUPERFAMILY beta-beta-alpha zinc fingers 223 261 IPR036236 -
Vifa1g00992 314 Gene3D Classic Zinc Finger 156 179 - -
Vifa1g00992 314 PANTHER ZINC FINGER PROTEIN WIP2 26 308 IPR043584 GO:0003700|GO:0010468
Vifa1g00992 314 FunFam Zinc finger protein WIP2 210 292 - -
Vifa1g00992 314 Gene3D Classic Zinc Finger 199 293 - -
Vifa1g00992 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 157 184 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00992 Vifa-Chr1 165324882 165327128 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00992 23 314 C2H2 Transcription Factor Family AT3G57670 58.721 1.64e-129 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa1g00992 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00992 - - gmx:100801922 463.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00992 1 165324882 165327128 Vifa1g00992 1 165324882 165327128 ECH
Vifa5g02401 5 787175973 787177725 Vifa1g00992 1 165324882 165327128 ECH
Vifa3g00546 3 95301682 95303894 Vifa1g00992 1 165324882 165327128 ECH