Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g00992 | ATGAATTCTCAACCCTACTTCTCCAACAACTTGAATGGTTATTATTTTGACCTAAATAGCCCTCCATTCTATAATTTTCCATCTAGTTTCCATCAAGACAACATATCTTTCTCATCTTCATCTCAATCATCTCCCACTCCAAGAGAAGCTCTTCCTTTACTTAACCTAAACCCTACAAAACATGAAGATCTTCTTCTAGAATCTTCTTTTTCTTCCATGGAAATGATCAACATGAAAGAGAAAGAACAACTAAGTATATCATCAAATTCTCTAGATGATGTTGATGATGCTGTTACTGTTGCTTTACATCTAGGGCTTCCAAGTATAGCTTCATCTGATTTGGCTTCTGAGAAAGAAGATGACGATGAAAAAGTTGTAACTCTTGCTTCTGAGTGTCCACCAAGTAAAATTAATAGGGGTCAGTATTGGATCCCTACCCCTGCTCAGATTCTTATTGGTCCTACACAGTTTTCATGTCCTCTTTGTTTCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCACAATATAGAAAAGGACCAGAATCTCTTCGAGGAACACAACCAACAGCCATGTTAAGACTCCCATGTTATTGTTGTGCATCCGGATGCAAGAACAACATTGATCATCCAAGAGCAAAGCCACTAAAAGATTTCAGAACACTTCAAACACATTACAAGAGAAAGCATGGAATAAAACCCTTCATGTGTAGAAAGTGTTGCAAAGCATTTGCAGTGAGAGGTGATTGGAGAACTCATGAGAAAAACTGTGGGAAACTTTGGTATTGTTGTTGTGGGTCAGATTTTAAACACAAAAGATCACTTAAAGATCATATAAAGGCATTTGGAAATGGACATAAAGCTTATGGAATTGATGATCAAGATGGCTCTGAAATTGAGCAAGAAAATGAATCTTTTCAGTCATAG | 945 | 0.3704 | MNSQPYFSNNLNGYYFDLNSPPFYNFPSSFHQDNISFSSSSQSSPTPREALPLLNLNPTKHEDLLLESSFSSMEMINMKEKEQLSISSNSLDDVDDAVTVALHLGLPSIASSDLASEKEDDDEKVVTLASECPPSKINRGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCASGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCCCGSDFKHKRSLKDHIKAFGNGHKAYGIDDQDGSEIEQENESFQS | 314 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g00992 | 314 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 159 | 179 | IPR013087 | - | |
Vifa1g00992 | 314 | SUPERFAMILY | beta-beta-alpha zinc fingers | 223 | 261 | IPR036236 | - | |
Vifa1g00992 | 314 | Gene3D | Classic Zinc Finger | 156 | 179 | - | - | |
Vifa1g00992 | 314 | PANTHER | ZINC FINGER PROTEIN WIP2 | 26 | 308 | IPR043584 | GO:0003700|GO:0010468 | |
Vifa1g00992 | 314 | FunFam | Zinc finger protein WIP2 | 210 | 292 | - | - | |
Vifa1g00992 | 314 | Gene3D | Classic Zinc Finger | 199 | 293 | - | - | |
Vifa1g00992 | 314 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 157 | 184 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g00992 | Vifa-Chr1 | 165324882 | 165327128 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g00992 | 23 | 314 | C2H2 Transcription Factor Family | AT3G57670 | 58.721 | 1.64e-129 | 372 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Vifa1g00992 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g00992 | - | - | gmx:100801922 | 463.381 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa1g00992 | 1 | 165324882 | 165327128 | Vifa1g00992 | 1 | 165324882 | 165327128 | ECH | |
Vifa5g02401 | 5 | 787175973 | 787177725 | Vifa1g00992 | 1 | 165324882 | 165327128 | ECH | |
Vifa3g00546 | 3 | 95301682 | 95303894 | Vifa1g00992 | 1 | 165324882 | 165327128 | ECH |