Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00980 ATGAACTCAAACAACTGGCTTTCATTTCCACTTTCTCCAACTCATCCTTCTCCATTACAACCTCAGTCTCATCATCATCATTTTTCTCTTGGAACATTAGTCAATGACAACATGTTGGAAACCCCTTTCCAAAACCATGATTGGAATCTGATGAATACTCTCAATCACAGTCACAGTAACAGTAACAACGAAGTTCCAAAGGTTGCAGATTTTCTTGGTGTGAACAGCAAGAGTACTACTGAAAATGAGTCAGATCTTGCAGCTTTCAATGAAATTAATGACCATTCTTCAGATAATTACTTCTTCATACCAACTTCTAGCAATAGTTATGATCAATATCAAGAGAATGGTAACAATAATCTGCAGTCATTGACATTATCAATGGGGAGTGGTACTAAAGATTCCACATGTGAAACCAGTGGCGATAATAATAACACTATAGTTGAAGCAGCTGCACCTAAAAGAGCTTTGGATACCTTTGGCCAAAGAACATCAATATACCGCGGTGTAACAAGACATAGATGGACCGGAAGATATGAAGCTCATCTTTGGGATAATACTTGTAGAAGGGAAGGACAGTCAAGAAAAGGTCGCCAAGTCTATTTAGGTGGTTATGACAAAGAAGAAAAAGCAGCAAGAGCTTATGATTTAGCTGCACTAAAATACTGGGGAACATCCACCACAACAAACTTTCCGATTAGTAATTATGAGAAGGAAGTTGAAGAAATGAAGAACATGACCAGACAAGAATTTGTTGCATCCATAAGAAGAAAAAGCAGTGGATTTTCAAGGGGTGCTTCAATGTATCGTGGAGTCACAAGGCATCACCAACATGGAAGATGGCAAGCGAGAATCGGTAGAGTTGCGGGAAACAAAGATCTTTACTTAGGAACATTCAGTACTGAAGAAGAAGCTGCAGAAGCTTATGATATAGCAGCAATAAAGTTCAGAGGGTTAAGTGCAGTAACAAACTTCGACATGAATCGTTACGACGTGAAAGCGATTCTTGAGAGTAATACTCTTCCTATAGGAGGAGGTGCTGCAAAACGGTTGAAAGAAGCTCAAGCTCTGGAATGTTCTAGAAAAAGGGAACAAGAGATGATAGCACTTCAATATGGACTAGGACTAGGAGGATCTTCAAGTTCAAGTAGGTTAGAATTACAAGGTTACCCTTTAATACAATTTGAACAACAACAACAACAAACACAACAACAACAGCAACAACCTTTGTTAACACTACAAAACCAGGAAGTATATCAGTCGTCGTCGTTTCATGATCAGAGTTATTTACAAACTCAGCTTCAGTTACATCAACAACAACAACAAAGTGAGTTTTACAACTATAATGGTGATTATAGTATTCAGAATCACCCGGATTTGATGGAGAATGATGGTAGAGGAGGGTATATTGGGAATAATAACAATGTTATGGGGGGAGCAGCGGATTACGACATGTCATCCGGAGGTTATGGAGGTTGGTCGGCGGGAGATTCCATGCAAGCAGCTTCAAATGGAGGTGGTGGTGTTTTCACAATGTGGAATGGTTTGAGTAATTAA 1557 0.3918 MNSNNWLSFPLSPTHPSPLQPQSHHHHFSLGTLVNDNMLETPFQNHDWNLMNTLNHSHSNSNNEVPKVADFLGVNSKSTTENESDLAAFNEINDHSSDNYFFIPTSSNSYDQYQENGNNNLQSLTLSMGSGTKDSTCETSGDNNNTIVEAAAPKRALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNTCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEVEEMKNMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLSAVTNFDMNRYDVKAILESNTLPIGGGAAKRLKEAQALECSRKREQEMIALQYGLGLGGSSSSSRLELQGYPLIQFEQQQQQTQQQQQQPLLTLQNQEVYQSSSFHDQSYLQTQLQLHQQQQQSEFYNYNGDYSIQNHPDLMENDGRGGYIGNNNNVMGGAADYDMSSGGYGGWSAGDSMQAASNGGGGVFTMWNGLSN 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00980 518 Pfam AP2 domain 166 224 IPR001471 GO:0003700|GO:0006355
Vifa1g00980 518 Pfam AP2 domain 269 318 IPR001471 GO:0003700|GO:0006355
Vifa1g00980 518 CDD AP2 165 234 IPR001471 GO:0003700|GO:0006355
Vifa1g00980 518 PRINTS Ethylene responsive element binding protein signature 308 328 IPR001471 GO:0003700|GO:0006355
Vifa1g00980 518 PRINTS Ethylene responsive element binding protein signature 167 178 IPR001471 GO:0003700|GO:0006355
Vifa1g00980 518 ProSiteProfiles AP2/ERF domain profile. 166 232 IPR001471 GO:0003700|GO:0006355
Vifa1g00980 518 FunFam AP2-like ethylene-responsive transcription factor ANT 165 234 - -
Vifa1g00980 518 FunFam AP2-like ethylene-responsive transcription factor 267 328 - -
Vifa1g00980 518 SUPERFAMILY DNA-binding domain 267 327 IPR016177 GO:0003677
Vifa1g00980 518 SUPERFAMILY DNA-binding domain 165 234 IPR016177 GO:0003677
Vifa1g00980 518 Gene3D AP2/ERF domain 268 328 IPR036955 GO:0003700|GO:0006355
Vifa1g00980 518 Gene3D AP2/ERF domain 166 234 IPR036955 GO:0003700|GO:0006355
Vifa1g00980 518 CDD AP2 267 326 IPR001471 GO:0003700|GO:0006355
Vifa1g00980 518 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 65 427 - -
Vifa1g00980 518 SMART rav1_2 166 238 IPR001471 GO:0003700|GO:0006355
Vifa1g00980 518 SMART rav1_2 268 332 IPR001471 GO:0003700|GO:0006355
Vifa1g00980 518 ProSiteProfiles AP2/ERF domain profile. 268 326 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00980 Vifa-Chr1 164058664 164060704 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00980 1 514 AP2-EREBP Transcription Factor Family AT1G51190 59.829 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vifa1g00980 AP2 9.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00980 K09285 - gmx:100788471 607.06