Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00973 ATGCCAATTTTTACATTTGGTCATTCTAAGTTGACTGCAACCTTAGGTTTTCAGTTGCCATGTATTTGTGTTAGGAAGATGAGGTTGATTACAAAGGTTCAGTGTGCTGTTGCTGATATGACGTATAGTTCCAGTACTGGTGATTCACAGGGACCTAATCAGGACTCGGGCAAAATTCAAAGGAAACGGGGAGGTCCCTCGTCGTCGCATGTTGGTTACATTCGTCCTAGTTTATATGAAATGAAGAAAGATAAGGTGGCATTGCGTGAAAATGTTTATGAGTTCTTGCGAGGAATTGGGATTGTTCCTGATGAGCTTGATGGTCTTGAACTTCCTGTAACGGTTGATGTTATGAAGGAGCGTGTGGATTTTCTTCATAACTTGGGGCTTACGAAACAAGATATTAATAACTATCCTCTTGTTCTTGGTTGTAGCGTCAAGAAGAACATGGTTCCTGTGCTTGATTACCTCGGCAAATTGGGAGTTAGGAAATCGATGTTAGCGAAGTTTTTGCAGAGGTACCCGCAAGTGCTTCATGCTAGTGTGGTTGTGGATCTTGTGCCGGTGGTTAAGTATCTTCAAGGGATGGATATTAAGCCCAATGATATTCCTCATGTTCTTGAGAGGTATCCTGAAGTGCTAGGATTCAAACTTGAGGGAACTATGAGTACGTCAATTGCTTATTTGGTCGGAATTGGTGTTGGAAGAAGAGAACTCGGAGGTGTCTTAACTAGATATCCAGAGATTTTGGGGATGCGGGTTGGTAGAGTCATCAAGCCTTTTGTGGAGTATTTAGAAAGCTTGGGTATTCCAAGGCTCGCCATTGCTAGACTGATAGAGACACAACCTTATATCCTTGGATTCGATCTGAACGAGAAGGTGAAGCCAAATGTCAAATCCCTCGAAGAGTTTAATGTTCGGCGAACATCAATTGCCTCGATAATCGCTCAGTATCCTGACATCATTGGAGCCGACCTAGAGCCAAAGCTTGCCAATAAGAAAAGCGTTCTCAATTCTGTACTTGATTTGGATCCTGAGGATTTCGGCTTAATCGTTGAGAAAATGCCGCAGGTAGTAAGCCTCAGTGATACACCTATGCTAAAGCATGTTGATTTTCTTAAGGAATGTGGATTTTCCGCTCTGCAAATGAGGAAGATGATTGTTGGATGCCCTCAACTACTTGCTTTAAACATTGATATCATGAAACTTAGCTTTGATTTCTTCCAAAGCGAGATGGAACAGCCTTTAGAAGACTTGGTTGAATTTCCAGCATTCTTCACTTATGGTTTGGAGTCAACTATAAAACCTAGGCATAACATGGTTGCAAAGAAAGCATTGAAGTGTTCGCTGGCATGGATGCTTAATTGTTCAAATGAGAAATTTGAGCAGCGGATGGATTATGACACTATTGACATGGAAGAGATGGAAATGAAACCATCGTTTGACATGGATTCATTGATGCGACCAAGGAATGATGAATCGGATTCTGATTATGAATACAGTGATTCTGACGATGTTGATGACGAGTAA 1530 0.415 MPIFTFGHSKLTATLGFQLPCICVRKMRLITKVQCAVADMTYSSSTGDSQGPNQDSGKIQRKRGGPSSSHVGYIRPSLYEMKKDKVALRENVYEFLRGIGIVPDELDGLELPVTVDVMKERVDFLHNLGLTKQDINNYPLVLGCSVKKNMVPVLDYLGKLGVRKSMLAKFLQRYPQVLHASVVVDLVPVVKYLQGMDIKPNDIPHVLERYPEVLGFKLEGTMSTSIAYLVGIGVGRRELGGVLTRYPEILGMRVGRVIKPFVEYLESLGIPRLAIARLIETQPYILGFDLNEKVKPNVKSLEEFNVRRTSIASIIAQYPDIIGADLEPKLANKKSVLNSVLDLDPEDFGLIVEKMPQVVSLSDTPMLKHVDFLKECGFSALQMRKMIVGCPQLLALNIDIMKLSFDFFQSEMEQPLEDLVEFPAFFTYGLESTIKPRHNMVAKKALKCSLAWMLNCSNEKFEQRMDYDTIDMEEMEMKPSFDMDSLMRPRNDESDSDYEYSDSDDVDDE 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00973 509 SMART mt_12 312 344 IPR003690 GO:0003690|GO:0006355
Vifa1g00973 509 SMART mt_12 416 447 IPR003690 GO:0003690|GO:0006355
Vifa1g00973 509 SMART mt_12 204 235 IPR003690 GO:0003690|GO:0006355
Vifa1g00973 509 SMART mt_12 132 163 IPR003690 GO:0003690|GO:0006355
Vifa1g00973 509 SMART mt_12 384 415 IPR003690 GO:0003690|GO:0006355
Vifa1g00973 509 SMART mt_12 349 379 IPR003690 GO:0003690|GO:0006355
Vifa1g00973 509 SMART mt_12 276 307 IPR003690 GO:0003690|GO:0006355
Vifa1g00973 509 SMART mt_12 240 271 IPR003690 GO:0003690|GO:0006355
Vifa1g00973 509 SMART mt_12 168 199 IPR003690 GO:0003690|GO:0006355
Vifa1g00973 509 MobiDBLite consensus disorder prediction 478 496 - -
Vifa1g00973 509 MobiDBLite consensus disorder prediction 42 71 - -
Vifa1g00973 509 FunFam Transcription termination factor MTERF4, chloroplastic 256 470 - -
Vifa1g00973 509 Gene3D Transcription termination factor 3, mitochondrial 259 471 IPR038538 -
Vifa1g00973 509 Gene3D Transcription termination factor 3, mitochondrial 133 258 IPR038538 -
Vifa1g00973 509 PANTHER CGI-12 PROTEIN-RELATED 153 465 IPR003690 GO:0003690|GO:0006355
Vifa1g00973 509 MobiDBLite consensus disorder prediction 42 63 - -
Vifa1g00973 509 MobiDBLite consensus disorder prediction 478 509 - -
Vifa1g00973 509 Pfam mTERF 154 462 IPR003690 GO:0003690|GO:0006355
Vifa1g00973 509 FunFam Transcription termination factor mterf4, chloroplastic 118 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00973 Vifa-Chr1 163851401 163852930 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa1g00973 mTERF 6.9e-107 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00973 K15032 - gmx:100785223 758.829