Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00972 ATGAAAGTTATGAACTTTTCTTGTGGTGTAACAAAACCCAATTTTCCGTTTTCTCAAACAGAAATGCCAATTTTTACATTTGGTCATTCTAAGTTGACTGCAACCTTAGGTTTTCAGTTGCCATGTATTTGTGTTAGGAAGATGAGGTTGATTACAAAGGTTCAGTGTGCTGTTGCTGATATGACGTATAGTTCCAGTACTGGTGATTCACAGGGACCTAATCAGGACTCGGGCAAAATTCAAAGGAAACGGGGAGGTCCCTCGTCGTCGCATGTTGGTTACATTCGTCCTAGTTTATATGAAATGAAGAAAGATAAGGTGGCATTGCGTGAAAATGTTTATGAGTTCTTGCGAGGAATTGGGATTGTTCCTGATGAGCTTGATGGTCTTGAACTTCCTGTAACGGTTGATGTTATGAAGGAGCGTGTGGATTTTCTTCATAACTTGGGGCTTACGAAACAAGATATTAATAACTATCCTCTTGTTCTTGGTTGTAGCGTCAAGAAGAACATGGTTCCTGTGCTTGATTACCTCGGCAAATTGGGAGTTAGGAAATCGATGTTAGCGAAGTTTTTGCAGAGGTACCCGCAAGTGCTTCATGCTAGTGTGGTTGTGGATCTTGTGCCGGTGGTTAAGTATCTTCAAGGGATGGATATTAAGCCCAATGATATTCCTCATGTTCTTGAGAGGTATCCTGAAGTGCTAGGATTCAAACTTGAGGGAACTATGAGTACGTCAATTGCTTATTTGGTCGGAATTGGTGTTGGAAGAAGAGAACTCGGAGGTGTCTTAACTAGATATCCAGAGATTTTGGGGATGCGGGTTGGTAGAGTCATCAAGCCTTTTGTGGAGTATTTAGAAAGCTTGGGTATTCCAAGGCTCGCCATTGCTAGACTGATAGAGACACAACCTTATATCCTTGGATTCGATCTGAACGAGAAGGTGAAGCCAAATGTCAAATCCCTCGAAGAGTTTAATGTTCGGCGAACATCAATTGCCTCGATAATCGCTCAGTATCCTGACATCATTGGAGCCGACCTAGAGCCAAAGCTTGCCAATAAGAAAAGCGTTCTCAATTCTGTACTTGATTTGGATCCTGAGGATTTCGGCTTAATCGTTGAGAAAATGCCGCAGGTAGTAAGCCTCAGTGATACACCTATGCTAAAGCATGTTGATTTTCTTAAGGAATGTGGATTTTCCGCTCTGCAAATGAGGAAGATGATTGTTGGATGCCCTCAACTACTTGCTTTAAACATTGATATCATGAAACTTAGCTTTGATTTCTTCCAAAGCGAGATGGAACAGCCTTTAGAAGACTTGGTTGAATTTCCAGCATTCTTCACTTATGGTTTGGAGTCAACTATAAAACCTAGGCATAACATGGTTGCAAAGAAAGCATTGAAGTGTTCGCTGGCATGGATGCTTAATTGTTCAAATGAGAAATTTGAGCAGCGGATGGATTATGACACTATTGACATGGAAGAGATGGAAATGAAACCATCGTTTGACATGGATTCATTGATGCGACCAAGGAATGATGAATCGGATTCTGATTATGAATACAGTGATTCTGACGATGTTGATGACGAGTAA 1593 0.4112 MKVMNFSCGVTKPNFPFSQTEMPIFTFGHSKLTATLGFQLPCICVRKMRLITKVQCAVADMTYSSSTGDSQGPNQDSGKIQRKRGGPSSSHVGYIRPSLYEMKKDKVALRENVYEFLRGIGIVPDELDGLELPVTVDVMKERVDFLHNLGLTKQDINNYPLVLGCSVKKNMVPVLDYLGKLGVRKSMLAKFLQRYPQVLHASVVVDLVPVVKYLQGMDIKPNDIPHVLERYPEVLGFKLEGTMSTSIAYLVGIGVGRRELGGVLTRYPEILGMRVGRVIKPFVEYLESLGIPRLAIARLIETQPYILGFDLNEKVKPNVKSLEEFNVRRTSIASIIAQYPDIIGADLEPKLANKKSVLNSVLDLDPEDFGLIVEKMPQVVSLSDTPMLKHVDFLKECGFSALQMRKMIVGCPQLLALNIDIMKLSFDFFQSEMEQPLEDLVEFPAFFTYGLESTIKPRHNMVAKKALKCSLAWMLNCSNEKFEQRMDYDTIDMEEMEMKPSFDMDSLMRPRNDESDSDYEYSDSDDVDDE 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00972 530 SMART mt_12 437 468 IPR003690 GO:0003690|GO:0006355
Vifa1g00972 530 SMART mt_12 297 328 IPR003690 GO:0003690|GO:0006355
Vifa1g00972 530 SMART mt_12 225 256 IPR003690 GO:0003690|GO:0006355
Vifa1g00972 530 SMART mt_12 370 400 IPR003690 GO:0003690|GO:0006355
Vifa1g00972 530 SMART mt_12 153 184 IPR003690 GO:0003690|GO:0006355
Vifa1g00972 530 SMART mt_12 405 436 IPR003690 GO:0003690|GO:0006355
Vifa1g00972 530 SMART mt_12 261 292 IPR003690 GO:0003690|GO:0006355
Vifa1g00972 530 SMART mt_12 189 220 IPR003690 GO:0003690|GO:0006355
Vifa1g00972 530 SMART mt_12 333 365 IPR003690 GO:0003690|GO:0006355
Vifa1g00972 530 MobiDBLite consensus disorder prediction 63 84 - -
Vifa1g00972 530 MobiDBLite consensus disorder prediction 499 517 - -
Vifa1g00972 530 Pfam mTERF 175 483 IPR003690 GO:0003690|GO:0006355
Vifa1g00972 530 Gene3D Transcription termination factor 3, mitochondrial 154 278 IPR038538 -
Vifa1g00972 530 Gene3D Transcription termination factor 3, mitochondrial 279 492 IPR038538 -
Vifa1g00972 530 MobiDBLite consensus disorder prediction 63 92 - -
Vifa1g00972 530 MobiDBLite consensus disorder prediction 499 530 - -
Vifa1g00972 530 PANTHER CGI-12 PROTEIN-RELATED 174 486 IPR003690 GO:0003690|GO:0006355
Vifa1g00972 530 FunFam Transcription termination factor MTERF4, chloroplastic 277 491 - -
Vifa1g00972 530 FunFam Transcription termination factor mterf4, chloroplastic 139 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00972 Vifa-Chr1 163851338 163852930 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa1g00972 mTERF 7.7e-107 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00972 K15032 - gmx:100785223 783.482