Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00970 ATGGGTGCCATCGTCGAGTGTTTTCCGCCGCTGCGGGAGGAGGAGATGGCGGTTCTATCGCTTAACAAACTGCCGTTAGGTTTCCGGTTCCGTCCAACCGACGAGGAGCTTGTTGATTACTATCTCAGGCTTAAGATCAACGGGAACGGTGATGAAGTTTGGGTTATCAGGGAGGTTGATGTTTGTAAATGGGAGCCTTGGGATTTGCCTGATTTATCTGTTGTGAGGAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCGCAGGATCGGAAGTATCCAAATGGGAATAGGTTGAACAGAGCGACGGAGCATGGTTATTGGAAGGCAACGGGGAAGGATAGGATGATTAAGTCTGGACCGACGTTGATTGGAATGAAGAAGACTCTTGTTTTCTACGCCGGTCGTGCTCCCAAGGGGCAGAGGACCCATTGGGTTATGCATGAGTATAGGCCTACTTTGAAGGAGCTTGATGGTACTAACCCCGGACAGAACCCGTATGTTCTCTGTCGCTTGTTTAAGAAGCAGGATGAGAGTCTCAATAATTCAAACTGTTGTGAAGTCGAGCAGACTGCCTCAACTCCTATGACTGCCAATTACTCTCCAGAAGAAATACAGTCTGATCTGAATCTGGTTCCTGTAACTTCCTCACCGGCCACAGTGGATGATAAACACCTACCAGATATCCCTGAGAACTCCGAGGAAGTGATATCCAACGTTATAACCCCATCTGATTGCTACAGCGATGCATGTAATGCTGCTGATGCACTGTATCAAATTGTAGAAGTACCGGCTGCAGAGGAGGACCCACTGTTGAACTTTGACATATTTGATGACCCACCGTTGGAGTCATTGGGTGATAAATTATTCTCCCCACTCCATGCACATTTTCCACCAGAATTTTACCATCAAGCCAACAATGAATTATTTCATTATGGTACAAATAAGATGGATGATTCAGACTTTTTGAACTCAGCTATTAATTGGGATGAACTCTGTGATTCAATCTATCTTGAAGATGAGAACAATGGGCCATGCAGTGTTTCAGATGTGGAAATGGCCAATATGACGCATCTGCAAGCATCACATGCTTATCCCGGGGGGGCTATTCTGCAAAATAGCAATGTAGGATCGTTTCAGAACAATTCCCATATGACATTTTCAACTGATTTTAATATGGACCAAACATCCACTGTCACCAATGACTATCAGCAATCAGGGAATTTGGACGCTGTTGTCCATGGCGACAACACTGGAATCCGAATAAGAAGTCGACAAGGACAAAATGAACAGCCAAACATGAACCCAGTGATGCAAGCACAAGGTAGTGCCCCAAGGAGAATACGATTGGGAGGGTTTGTGAAACATTCCCTTGGTTCTGAGGAGACGACACATTCCCCGACACATTCCCTTTGTTCTGAGGAGACGACAGAAGATGAGTGTTGTACAGCAGAATATGAGCAATCAAGGAATTTGGATCCTGTTGTCAATGGGGACACTGGTATCAGGATAAGGTCTCGACAAGGAAGAAATGAACAGCAAAACATGAATCCAGTGATGCAAGCACAAGGTAGTGCACCGAGGAGAATACGATTGGGAGGATTTGTGATGCATTCCCTTGGTTCCCAGGGGACGTCAAAAGATGTGAGCTGTGCACCTGAAAACCATAACTCAGAAACCATCATTGCCAGCGAATCATCTATTTTGCAGGAGAGGGAAGCATCAGAAAACCTTGCTACTAACTATGTAGATAAACCAGAGAAGACATCTCCGACAGAATCCACCTTGGGGTGGAAAGACTTTCTAATGGGCAGAAGGGCCCATAACACATCAAAGCCATCCACGAATCGGTCCAAGTGGTTTGCTGTTCTTGCAGTATCTGCAGGTGTACTGGTCTCATCAGTATTGTTTATGAATATTTGGGGATATCTTAGATTTGAAACTGCTTATTAG 1950 0.4523 MGAIVECFPPLREEEMAVLSLNKLPLGFRFRPTDEELVDYYLRLKINGNGDEVWVIREVDVCKWEPWDLPDLSVVRNKDPEWFFFCPQDRKYPNGNRLNRATEHGYWKATGKDRMIKSGPTLIGMKKTLVFYAGRAPKGQRTHWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKQDESLNNSNCCEVEQTASTPMTANYSPEEIQSDLNLVPVTSSPATVDDKHLPDIPENSEEVISNVITPSDCYSDACNAADALYQIVEVPAAEEDPLLNFDIFDDPPLESLGDKLFSPLHAHFPPEFYHQANNELFHYGTNKMDDSDFLNSAINWDELCDSIYLEDENNGPCSVSDVEMANMTHLQASHAYPGGAILQNSNVGSFQNNSHMTFSTDFNMDQTSTVTNDYQQSGNLDAVVHGDNTGIRIRSRQGQNEQPNMNPVMQAQGSAPRRIRLGGFVKHSLGSEETTHSPTHSLCSEETTEDECCTAEYEQSRNLDPVVNGDTGIRIRSRQGRNEQQNMNPVMQAQGSAPRRIRLGGFVMHSLGSQGTSKDVSCAPENHNSETIIASESSILQEREASENLATNYVDKPEKTSPTESTLGWKDFLMGRRAHNTSKPSTNRSKWFAVLAVSAGVLVSSVLFMNIWGYLRFETAY 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00970 649 FunFam Nac domain-containing protein 86 33 177 - -
Vifa1g00970 649 SUPERFAMILY NAC domain 16 174 IPR036093 GO:0003677|GO:0006355
Vifa1g00970 649 Pfam No apical meristem (NAM) protein 25 150 IPR003441 GO:0003677|GO:0006355
Vifa1g00970 649 Gene3D NAC domain 33 179 IPR036093 GO:0003677|GO:0006355
Vifa1g00970 649 ProSiteProfiles NAC domain profile. 24 174 IPR003441 GO:0003677|GO:0006355
Vifa1g00970 649 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 23 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00970 Vifa-Chr1 163106812 163109860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00970 16 449 NAC Transcription Factor Family AT4G35580 43.013 1.38e-96 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa1g00970 NAM 2.5e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00970 - - psat:127118605 1131.32