Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00965 ATGGATTCTACTCAAGAACTCAACCTTAACAACCTCAAAGCACTCAAAATCCTAGGTAAAGGAGCAATGGGGACCGTTTTCTTAATTCAACAAAACAACTCCTTCATGGCACTCAAAGTAGTTGATAAAACCTCGACTCACGACGCCGAGCGTCGAGCCCGTTGGGAAACCAAAGTCTTATCCAATTTAGCCCATCCATTTCTCCCATCCCTCCTGGGCTCTTTCGAAACAGGCCAGTTATTAGCCTGGTCTGTTCCGTATTGCTCAGGAGGCGATCTCAATGTCCTCCGCTACCACCAAACGGATCGCGTCTTCTCCACAAATGTGATCCGTTTCTACATAGCAGAGATTATCTGCGCTCTCGACCATCTCCATACCATGGGCATCGCTTACCGTGACCTTAAACCGGAAAACGTACTCATTCAACAATCAGGCCACGTCACGTTAACCGATTTCGATCTCTCACGTAGACTCTCTCACAAAACGGTTAAAATCAAAACTCTCATTTCACTCGAGGATAACAGAATCCGTGAATCCCGCCGCAAATTCCGGAAATGGAGAGTCCCGGAGGCTAACGGGAAGATAGCAAGAGTTAGTCCGGTGGTGCGACGGGAGCTCAGTTTCAGTAACGGTGAAAGGTCTAATTCATTTGTCGGTACAACGGAATATGTCGCGCCGGAGGTTGTTCGCGGTGACGGACATGAGTTTGCGGTTGATTTTTGGGCGCTTGGAGTTTTAACCTACGAGATGATGTATGGGAAAACGCCGTTCAAGGGGAAGAACAAGAAGGAAACGTTTAGAAACGTGCTTTTCAAGTCGCCGGAGTTTGTTGGAAGGAAAACGGCGTTAACGGATCTTATAGAGCGGTTGCTTGAAAAGGATCCGATGAAGAGATTAGGTTACGTCGGTGGTGCTAGTGAGATAAAGGAGCATGAGTTTTTCAGAGGAGTTAAGTGGGAGATGTTGACGGAAGTTGTTCGGCCGCCGTTTATTCCGTCGAGAGATGAAACTTTTTTCACGTCGGAGAAATTTGCAGAGGGGGTGAATATAAAGGAATACTTTGAGAAGATGAAGTCTCCGCCGTCGTTGCCGGCTTCGCCGTTAAGGTCACCGTCGTCTGAGTTTCGGAATAGTGTTTCTTTTGGAGAGTTCTGA 1155 0.4736 MDSTQELNLNNLKALKILGKGAMGTVFLIQQNNSFMALKVVDKTSTHDAERRARWETKVLSNLAHPFLPSLLGSFETGQLLAWSVPYCSGGDLNVLRYHQTDRVFSTNVIRFYIAEIICALDHLHTMGIAYRDLKPENVLIQQSGHVTLTDFDLSRRLSHKTVKIKTLISLEDNRIRESRRKFRKWRVPEANGKIARVSPVVRRELSFSNGERSNSFVGTTEYVAPEVVRGDGHEFAVDFWALGVLTYEMMYGKTPFKGKNKKETFRNVLFKSPEFVGRKTALTDLIERLLEKDPMKRLGYVGGASEIKEHEFFRGVKWEMLTEVVRPPFIPSRDETFFTSEKFAEGVNIKEYFEKMKSPPSLPASPLRSPSSEFRNSVSFGEF 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00965 384 Gene3D Transferase(Phosphotransferase) domain 1 211 333 - -
Vifa1g00965 384 ProSiteProfiles Protein kinase domain profile. 12 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00965 384 SUPERFAMILY Protein kinase-like (PK-like) 9 372 IPR011009 -
Vifa1g00965 384 Gene3D Phosphorylase Kinase; domain 1 12 91 - -
Vifa1g00965 384 PANTHER FLIPPASE KINASE 1-RELATED 5 336 - -
Vifa1g00965 384 ProSitePatterns Protein kinases ATP-binding region signature. 18 39 IPR017441 GO:0005524
Vifa1g00965 384 FunFam Serine/threonine-protein kinase OXI1 212 333 - -
Vifa1g00965 384 MobiDBLite consensus disorder prediction 368 384 - -
Vifa1g00965 384 FunFam Serine/threonine-protein kinase OXI1 92 160 - -
Vifa1g00965 384 MobiDBLite consensus disorder prediction 358 384 - -
Vifa1g00965 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Vifa1g00965 384 Gene3D Transferase(Phosphotransferase) domain 1 92 162 - -
Vifa1g00965 384 SMART serkin_6 12 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00965 384 Pfam Protein kinase domain 14 162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00965 384 Pfam Protein kinase domain 209 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00965 Vifa-Chr1 161938268 161939422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00965 7 361 AGC Kinase Gene Family AT1G51170 60.858 2.65e-157 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vifa1g00965 Pkinase 2.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00965 - K08286 gmx:100785281 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00965 1 161938268 161939422 Vifa1g00965 1 161938268 161939422 ECH
Vifa1g00965 1 161938268 161939422 Vifa6g00833 6 286647572 286648885 PCT