Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00958 ATGCAGTTATTATCCGACAAACTAAGTAACGGAAACCTTAACTCTAAGATTGAAGCTGCAAGAGAAATCAGAAGAATGGTTCGTAAATCATCTAAAACAAGGTCCAAATTCGCGGCTGTTGGTGTCATTCAACCGCTTATCTTTATGCTATCTTCTTCCAATCTTGATGCTCGTCAATCTTCTTTGCTGGCGCTTCTCAACCTTGCTGTTCGTAATGAGAGAAACAAGGTCCAAATAGTGACAGCTGGTGCAGTGCCTCCTCTGGTGGAGCTCCTCAAGATGCAAAACAATGGTATACGAGAATTGGCTACAGCCGCAATCTTAACACTCTCGTCTGCTGCATCCAACAAGTCGATTATTGCTGCTTCCGGAGCTGCTCCTCTCCTTGTTCAGATTCTCAAATCTGGAAGTGTTCAAAGCAAAGTTGATTCTGTTACAACCCTCCATAATCTCTCTATCAGCATTGAAAATTCCATCGAACTTCTCGACGCTAGTGCCCGTCTGTTACGGCTAACAGTAGAGGGCACAGTCAAAGCTCAAGATAAAGCCCGCACGCTTCTAGATTTGCTTCGAGATTCTCCTGAAGAAAAAAGACTAGACTCGTCGGTTTTGGAGAAAATTGTTTACGACATTGCTGAACGGCTAGATAGAGTAGATAAAGCTGGCGAAACATCGAAATGA 681 0.4347 MQLLSDKLSNGNLNSKIEAAREIRRMVRKSSKTRSKFAAVGVIQPLIFMLSSSNLDARQSSLLALLNLAVRNERNKVQIVTAGAVPPLVELLKMQNNGIRELATAAILTLSSAASNKSIIAASGAAPLLVQILKSGSVQSKVDSVTTLHNLSISIENSIELLDASARLLRLTVEGTVKAQDKARTLLDLLRDSPEEKRLDSSVLEKIVYDIAERLDRVDKAGETSK 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00958 226 SMART arm_5 30 70 IPR000225 GO:0005515
Vifa1g00958 226 SMART arm_5 71 112 IPR000225 GO:0005515
Vifa1g00958 226 SMART arm_5 113 153 IPR000225 GO:0005515
Vifa1g00958 226 Pfam Armadillo/beta-catenin-like repeat 72 111 IPR000225 GO:0005515
Vifa1g00958 226 Gene3D - 1 114 IPR011989 -
Vifa1g00958 226 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 83 125 IPR000225 GO:0005515
Vifa1g00958 226 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 41 83 IPR000225 GO:0005515
Vifa1g00958 226 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 7 175 - -
Vifa1g00958 226 SUPERFAMILY ARM repeat 1 196 IPR016024 -
Vifa1g00958 226 Gene3D - 115 226 IPR011989 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00958 7 197 U-box Gene Family AT3G46510 36.269 4.74e-23 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00958 K08332 - gmx:100782472 246.128