Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00957 ATGGAGTCAGATCTTCATCAACAGCAACAACCACAGGTGAGTTCTTCAGGTTTAACACGGTACCGATCAGCACCAAGTTCATATTTCAACAACATCATTGATAAAGAATTCTACGAGCATGTTTTCAATCGACCTTCAAGTCCAGAAACAGAGCGTGTTTTTTCAAGGTTTATGAACAGTTTAGGTTCAGAAGATGATTTACTCACTCAGAGAATAGTTGAATCGACGGTAAAAGAAGAAGACGAAATTGTTAATGTTAACGTTAACGTTAACATTAACCAACACCACCAACAACAAGAACAAGAACAACAAGAACAAGTACGAGAACAAGAACAGATTGTTCATCATCATCATCATCATCAGAGTAATAGTTATGAACAGTCTCATGGTTTTTATCAAACCTCAGTGATGCCACCTTTGCCAAACCAGAATGTTGTTTCTGGTTTGGATGGTGGGTTTTCAATGGAAGTTAATAGGTTACAGCAGATGAAGAGTCATGGTGGAAATAATTCTAATCTTATTAGACATAGTAGTTCACCAGCTGGATTATTTTCTCAAATCAACATTGAAAATGGGTATGTTAGTATGAGAGGAATGGGAAATTTAGGAGCTGTTAGTAGTTCTATGAAAGATGCAAAATTTTCTAGTGGAAGGAGTTTGAAGAGTTCAGTAAACTATTCATCTGGGATAATGTCAACAATAGCTGAAGTTGGGGACAAATGCAATGAAGAAAATAATCAAGAAAGTGAAGTTTTTGGTGAAACTCATGGTAACCGTTATATAGCGGATTATCAGGTTGATACTTGGGATGATACCGAAATGATGTCTGAAAATGTTGGTGGTTTGAAAAGATTTAGAGATAGTGATTCAAAACAACAATTTTCTGCTGGTTTTAATGCAGCTGCAGTTCAGAATGAAACAGGAGGAGGACATTCATCTTCTCCATTGGCTCATCAGTTGAGTATGCCAAATACTTCATCTGAAATGGCAGCTATTGAGAAGTTTCTGCATTTTTCTGATTCTGTACCGATGAAAATTCGCGCTAAACGAGGCTGTGCTACTCACCCAAGAAGCATAGCTGAGAGGGTTAGAAGGACTAAAATTAGCGAACGTATGAGGAAGCTACAAGATCTCGTCCCAAACATGGATAAGCAAACAAATACAGCAGATATGTTAGACTTGGCTGTGGATTACATCAAAGACCTTCAAAAGCAAGCTCAGAAGCTTCAAGATTGTCAAGCAAAGTGCACTTGCCCACACAAGAAGCAACAATAA 1275 0.3773 MESDLHQQQQPQVSSSGLTRYRSAPSSYFNNIIDKEFYEHVFNRPSSPETERVFSRFMNSLGSEDDLLTQRIVESTVKEEDEIVNVNVNVNINQHHQQQEQEQQEQVREQEQIVHHHHHHQSNSYEQSHGFYQTSVMPPLPNQNVVSGLDGGFSMEVNRLQQMKSHGGNNSNLIRHSSSPAGLFSQINIENGYVSMRGMGNLGAVSSSMKDAKFSSGRSLKSSVNYSSGIMSTIAEVGDKCNEENNQESEVFGETHGNRYIADYQVDTWDDTEMMSENVGGLKRFRDSDSKQQFSAGFNAAAVQNETGGGHSSSPLAHQLSMPNTSSEMAAIEKFLHFSDSVPMKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQAQKLQDCQAKCTCPHKKQQ 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00957 424 Coils Coil 93 113 - -
Vifa1g00957 424 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 61 416 - -
Vifa1g00957 424 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 355 415 IPR036638 GO:0046983
Vifa1g00957 424 SMART finulus 358 408 IPR011598 GO:0046983
Vifa1g00957 424 Pfam Helix-loop-helix DNA-binding domain 357 403 IPR011598 GO:0046983
Vifa1g00957 424 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 352 402 IPR011598 GO:0046983
Vifa1g00957 424 MobiDBLite consensus disorder prediction 95 134 - -
Vifa1g00957 424 MobiDBLite consensus disorder prediction 101 124 - -
Vifa1g00957 424 Gene3D - 353 423 IPR036638 GO:0046983
Vifa1g00957 424 MobiDBLite consensus disorder prediction 1 21 - -
Vifa1g00957 424 FunFam Transcription factor bHLH130 family 353 422 - -
Vifa1g00957 424 CDD bHLH_AtbHLH_like 357 410 IPR045239 -
Vifa1g00957 424 MobiDBLite consensus disorder prediction 304 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00957 Vifa-Chr1 159697215 159699476 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00957 6 418 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 37.705 3.01e-68 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g00957 HLH 5.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00957 - - gmx:100806368 474.167