Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00953 ATGGGTTCTTTATGTGATTTTTGTGGAGACCAGAGATCCTTGGTGTACTGCCGCTCTGATGCCGCTTCCTTATGTTTGTCATGTGATCGAAATGTCCATTCCGCTAACGCACTTTCTAAACGTCATTCAAGAACACTCGTATGCGAGAAGTGTAATTCACAACCTGCGTATGTGAGGTGTGTTGAAGAGAAAGCTTCATTTTGTCAGAACTGTGATTGGTCGGCTCATGGTACCGATCTGTCTTCTTCAACACATAAAAGACAATCAATCAATTGCTACTCTGGCTGTCCTTCGGCTTCCGAGCTTTCTTCTATATGGCCCTTTTTCTCGGATATCCCTTCTGTGGGGGAAGCATGTGAGCAGGAACTCGGTTTGATGAGCATTAATGAGAACCGCGACAATAAAGCTTCGGTTCCTCCAGAAAGCAAGAATGTATCTGGCTCAGCTCAAGTTGTCGCCGATCTTCCCAACAAGGATAAGTCTAGGGCCGGCACATCTTCAATAACCGAGTCACGCGCAGAACCTTGTGTTATTGACCAGCCGTCTGGACCTTCCAATGAATGTATGCCCAAGTTACAACATCCCAGTAGTATGGCATCTGCACTTTGCGAAGATTATAATTTGTACGACAATTTCAACATAGACGATATGGATCTTGAACTAGAGAACTATAAGGAAGTTTTTGCTTTTGCTCTCAATAACTCTGACGAGTTTTTTGGAAAAGGCGGTATCGATAGCTTATTCGAGAGAACAGATATGTATGCTAGTGCTGGTGATTCAAATTGCCGGGGTGCTATTGCAGCATCTTCAGATTCAATTGCTAGTGCTGGTGACAATCAAGAATGCGGCGGTGCTTCTTCAATGCTTCCCACTGGGGAGCCTCCATGGTGTCCTCCTTGCCCTGAAAATTCTATTCAATCTGCTACCCGTAGCAATGCTGTCTTGCGCTACAAGGAAAAGAAAAAGAATCGAAAGTTTGATAAGAAAGTGAGGTATGCTTCCCGGAAGGCTAGAGCTGATGTCAGAAAACGTGTGAAGGGCCGGTTCGTCAAAGCTGGTGAAACATTCGACTATGACCCTTTGAGCCAAACCAGAAGCTTCTGA 1104 0.4493 MGSLCDFCGDQRSLVYCRSDAASLCLSCDRNVHSANALSKRHSRTLVCEKCNSQPAYVRCVEEKASFCQNCDWSAHGTDLSSSTHKRQSINCYSGCPSASELSSIWPFFSDIPSVGEACEQELGLMSINENRDNKASVPPESKNVSGSAQVVADLPNKDKSRAGTSSITESRAEPCVIDQPSGPSNECMPKLQHPSSMASALCEDYNLYDNFNIDDMDLELENYKEVFAFALNNSDEFFGKGGIDSLFERTDMYASAGDSNCRGAIAASSDSIASAGDNQECGGASSMLPTGEPPWCPPCPENSIQSATRSNAVLRYKEKKKNRKFDKKVRYASRKARADVRKRVKGRFVKAGETFDYDPLSQTRSF 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00953 367 ProSiteProfiles CCT domain profile. 310 352 IPR010402 GO:0005515
Vifa1g00953 367 SMART bboxneu5 48 90 IPR000315 GO:0008270
Vifa1g00953 367 SMART bboxneu5 1 47 IPR000315 GO:0008270
Vifa1g00953 367 CDD Bbox1_BBX-like 47 90 - -
Vifa1g00953 367 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 355 - -
Vifa1g00953 367 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vifa1g00953 367 CDD Bbox1_BBX-like 4 47 - -
Vifa1g00953 367 Pfam CCT motif 310 352 IPR010402 GO:0005515
Vifa1g00953 367 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00953 Vifa-Chr1 158887947 158890738 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00953 1 367 C2C2-CO-like Transcription Factor Family AT3G07650 49.756 2.96e-124 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vifa1g00953 CCT 1e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00953 - - tpra:123922680 541.191