Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00951 ATGAAGAAATCATCAAGCACCAATTTGCAATATCAATCTAGTCAAAGAAAAAAGAATCCAAGTTTTCAAGATATTACAGAAACTGATTCAACAAAGAAAAATTCAGGACTCAAAAGTTTCATATCTATTGTGAAAAAACTTGCTTTGATTTTTGGTAGCAAAAGCAAAAAAACATCTTCAAATGTTGTTGGAAGTGATGACAGAAAGAATACATCAAAAACAAGATTTATGGTATCATCTTCAACTGATTTATCATCTGAAAGTGGCAATAAGAATTCATCAAAATGGAAATTTTCTTCTTCCTATGCATCATCTAGTACTACAAGTGGACAGCTTGGAATTGGAAATTTTACTTTTGATGAAATTTTTAAGTCAACTGCGAAATTCTCGCCAGATAATCAGATTGGTGAAGGTGGATTTGGAACTGTTTATAGAGGGAAGCTTAATGATGGGACTATTGTTGCCGTGAAGCGGGCGAAGAAGGAAGCTCTGCAGAGTCACTTATATGAGTTCAAGAATGAAATATACACTTTATCAAAAATAGAGCACTTGAATCTTGTGAGATTATATGGATATTTGGAGCATGGAGATGAGAAGCTTATTGTTGTTGAGTATGTTGCTAATGGAAATCTCAGAGAACATTTAGATGGCACTCGAGGCGATGGCCTAGAAATCGGTGAGCGTCTAGACATAGCAATCGATGTAGCTCATGCAATAACTTACCTTCATATGTACACAGATAATCCGATTATACATCGAGACATCAAAGCGTCAAACATCTTAATTAGTGAGAATTTAAGGGCTAAAGTTGCAGACTTTGGTTTCGCAAGGTTATCCGAAGACCCTGGTGCAACTCATATTTCGACTCAAGTTAAAGGAACAGCTGGTTATATGGATCCCGAGTACTTGAGAACATATCAACTCACAGAAAAGAGTGATGTTTATTCCTTCGGCGTATTGCTCGTTGAAATGATGACAGGAAGACATCCTATTGAGCCGAAGAAACAAATCGACGAGAGAGTCACAATCAGATGGGCAATGAAGATGCTAAGGAAAGGGGAAGCTGTGTTTGCAATGGATCCAAGATTGAGAAGAAATCCAGCCTCCATCAAGGCAATGAAGAAGGTTTTCAAGTTAGCTTTTCAATGCCTTGCACCTTCCATACATTCAAGGCCACCTATGAAGAATTGCGCCGAAGTTCTATGGGGAATCCGTAAAAGTTTTAAAGACGAAATCGCTCCTATTCCTACCTTACCTTCTCATCAATCCGAAAACATTCCTCAGAGAGAAAAGAATAAGCATATAGTATTTGGTATTGAAGATGATGACAGCTATAAATTTACCTCCGCGCCTAATCACATTCGATCATGA 1371 0.3742 MKKSSSTNLQYQSSQRKKNPSFQDITETDSTKKNSGLKSFISIVKKLALIFGSKSKKTSSNVVGSDDRKNTSKTRFMVSSSTDLSSESGNKNSSKWKFSSSYASSSTTSGQLGIGNFTFDEIFKSTAKFSPDNQIGEGGFGTVYRGKLNDGTIVAVKRAKKEALQSHLYEFKNEIYTLSKIEHLNLVRLYGYLEHGDEKLIVVEYVANGNLREHLDGTRGDGLEIGERLDIAIDVAHAITYLHMYTDNPIIHRDIKASNILISENLRAKVADFGFARLSEDPGATHISTQVKGTAGYMDPEYLRTYQLTEKSDVYSFGVLLVEMMTGRHPIEPKKQIDERVTIRWAMKMLRKGEAVFAMDPRLRRNPASIKAMKKVFKLAFQCLAPSIHSRPPMKNCAEVLWGIRKSFKDEIAPIPTLPSHQSENIPQREKNKHIVFGIEDDDSYKFTSAPNHIRS 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00951 456 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 206 414 - -
Vifa1g00951 456 SUPERFAMILY Protein kinase-like (PK-like) 104 404 IPR011009 -
Vifa1g00951 456 MobiDBLite consensus disorder prediction 57 95 - -
Vifa1g00951 456 Pfam Protein tyrosine and serine/threonine kinase 132 401 IPR001245 GO:0004672|GO:0006468
Vifa1g00951 456 MobiDBLite consensus disorder prediction 1 33 - -
Vifa1g00951 456 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 106 424 - -
Vifa1g00951 456 ProSitePatterns Protein kinases ATP-binding region signature. 135 161 IPR017441 GO:0005524
Vifa1g00951 456 ProSiteProfiles Protein kinase domain profile. 129 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00951 456 MobiDBLite consensus disorder prediction 74 95 - -
Vifa1g00951 456 CDD STKc_IRAK 135 401 - -
Vifa1g00951 456 SMART serkin_6 129 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00951 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Vifa1g00951 456 Gene3D Phosphorylase Kinase; domain 1 88 205 - -
Vifa1g00951 456 Gene3D Transferase(Phosphotransferase) domain 1 206 415 - -
Vifa1g00951 456 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 1 93 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00951 Vifa-Chr1 158714475 158716653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00951 101 394 Receptor kinase-like Gene Family AT1G79620 43.564 4.64e-70 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Vifa1g00951 PK_Tyr_Ser-Thr 4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00951 - - gmx:100811511 665.225