Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00929 ATGGCCGAGGCTTTGCTTACTGTTGTTTTTGAGAATTTGATGTCTCTTGTTCAAAATGAATTTGCTACAATTTCTGGAATCAAGTCAAAGGCTCAAAAGCTCTCAACCACTTTAGAACTCATCAATGCTGTTCTTGAAGATGCTGAGCACAAACAACTCACTAACCGTTCTATCAAGCTTTGGCTTCAACAACTCAAAGACGCAGTTTATGTGCTAGATGATATTCTTGACGAGTGTTTGTTCGAATCGGATAGACTTAAGGGAACGTCCTCTTTTAAACCAAAGAACATCATGTTTCGCCGTGAGATTGGCAACAAGTTCAAGGAGATCATAAGCAGATTCGATCAAATTGCTGACAATAAGAACAAGTTTCTTCTGCAGGTGGGTGGTTCTGTTAGGGAAAGCTCTATTGAGGTCGCTGACTGGCGCCAAACCACTTCAGTTATTGCCGAACCCAAAGTGTATGGAAGAGAAGATGATAAAGAGAAGATTGTCCAGTTTTTTCTTACTCAAGCAAAAGACTCTCACCTCCTTTCTGTGTATCCCATCGTTGGCTTAGGTGGTGTTGGAAAAACAACTCTGGCTCAGTTGGTCTACAATGACCGTCGGGTAAGTGTCAGTTTTGATATAAAAGTGTGGGTGTGTGTTTCTGAGGTTTTCACTTTGAAGATGATTATGTGTTCTATTATAGAATCTATCACAAGAGCTAAGTGTTATCGCACCAATTTAGATGTAATACAAAGAAAAGTGCAAGAACTATTGCAAGGTAAGCGATGTTTGTTGGTCTTGGATGATGTATGGAAAAGAAATCAGGAATTGGAATTTGGATTAAGCCAGAACATATGGAATAAGTTGAAATCAGTTTTGTCGTGTGGATCCAAAGGTTCTTCCGTTTTAGTTTCCACTCGTGACAAGGATGTTGCTGCAATCATGGGAACATGTCAAGATCATCACCTATCCGGGCTCTCTGAAGATGAATGTTGGTTGTTGTTCCAAGAATATGCATTTGGACACGAGAAAGAAAAACAAGCAAAACTTGTGGCAATAGGCAAGGAGATCATAAAGAAGTGTGGAGGATTGCCTCTTGCAGCACAAGCACTGGGAGGTCTAATGCACTCGAGAACTACTGAAAAGGAATGGCTTGAAATTAAAGATAGTGAGCTATGGACTTTACCCGATGAGAATATGATTTTGCCTGCCTTGAGATTGAGCTACACATATTTAACTCCCACCTTGAAGCAATGTTTTTCTTTTTGTGCTATATTTCCTAAAGATACAGAAATGAATAAAGAAGATTTGATTCATCTTTGGATGGCTAATGGGTTTATTTCATCGAGGGAAAATTTGGAGGTAGAAGATGTTGGCAATATGGTTTGGAATGAATTGTGCCAAAAGTCTTTCTTTCAAGACATCAAGATAGATGCTCATTCAGAAGACATTTCTTTCAAAATGCACGATCTTGTCCATGATTTAGCTCAACTTGTTACCGGGCCAGAGTGTATGATTATTAAGAACACAAACATTGATTTGTCAAGAAGCACTCACCATATTAGTTTTGACTATCGCAATTTGGTATCAATCAATAAGGAGACCTTCAGAAATATTGAGTCCTTGCGAACATTGTATGGTTTAAAAACTTACGACTGCCACACGTTTTTTCCTAGCTGCCACTTCCCGAATAACAACTCTTTACGGGTTTTACTCATATGTTCGGCAATGTTAGAATCCGTTGAGAGTTTTACTCATTTGAGGTATTTGGAACTTTATGGTTTCTCAAACCTTGAACCCATATCTAACTCAATTCATACCTTGCGGTATTTGGAAATCTTGAAATTTAAAAGTTTTTGGAAAATTCGATATCTACCGAAAAACTTGAGCCGCCTACAAAATCTCAGACACCTTGTCATCGAAGATTGTCATGTATTGTCTTCTATCTTTCCTAATATTGGAAAGTTATGTTGCCTAAGAACATTAAGTGTATTCATTGTTCGTCGGAAGATAGGATACAGCTTGGCAGAGCTACGTGATCTACAATTGGGAGGAAAACTGCGCATCGAAGGCCTAAAAAATGTTGATAGTTCATCTGAAGCTCGAGAGGCCAATTTAATGGGTAAAAAAGACCTCCAAGAATTATGCTTGTCATGGAGCAAAGGTACTGAGGGACCTAGTACTAGTGCAGAGGAAGTAATCGAGGCACTTCAACCTCACTCGAATCTTAAGAGGTTGAAAATAGATCTCTACGACGGAATTAGCTTACCAAGCTGGATCAGTATGTTGAGTAATTTAGCTTCTCTTGAACTTTCTTCTTGTGACAATTGCGTGCTGCTTTCACCACTTGGGAAACTACCATCTCTAAAAAAAATCCGTTTGCATCAGATGAATAATGTGCTATATATGAATGAAGATGAACCTCACCATGGTTTGGAGGAGACGTTTTTCCCATATCTGGAGGAACTCTACTTAGATGGGCTACCAAACTTAGAGCGATTGTTGAAAGTGCAAAGAGGAGAGATTTTCCCCCATCTTTCTAGTTTTACCATCATCAATTGCCCCAAACTTGTGTTGCCAAACCTTTCATTTGTTAAATACTTATTTGTAGATGGATGTAACAAGGAGTTACTGAGGCAAATCTCTAGTTTCTATGATCTTACCACTCTTCACCTTACTAAAAATGAAGATGTGACCTCCCTCCCTGAGGACATGTTGAGAAACCTGACTTCACTTCAAACTCTAACAATATCTGATTTCTTGAAATTGATGGAATTACCAAATGAACCCTTCAACCTTGCTTTGGAGCATCTCTGTATTACTCGTTGTGGCGAGCTTGAGTCTTTGCCAGAGCTAATTTGGGAAGGTCTGCAATCCCTTCGAACAATCGATATTATTGATTGTGAAGGATTGAGATCCTTGCCTGAAGGTATCCGACACCTCACTTCACTTGAGATTTTGACTATTCAAGGTTGCTCAACTTTAAAGAAACGATGTGAGGAGGTACTAGGGGAGGACTGGGACAAGATAGCGCACATTCAAAAATTACTGATTTGGTAG 3048 0.3921 MAEALLTVVFENLMSLVQNEFATISGIKSKAQKLSTTLELINAVLEDAEHKQLTNRSIKLWLQQLKDAVYVLDDILDECLFESDRLKGTSSFKPKNIMFRREIGNKFKEIISRFDQIADNKNKFLLQVGGSVRESSIEVADWRQTTSVIAEPKVYGREDDKEKIVQFFLTQAKDSHLLSVYPIVGLGGVGKTTLAQLVYNDRRVSVSFDIKVWVCVSEVFTLKMIMCSIIESITRAKCYRTNLDVIQRKVQELLQGKRCLLVLDDVWKRNQELEFGLSQNIWNKLKSVLSCGSKGSSVLVSTRDKDVAAIMGTCQDHHLSGLSEDECWLLFQEYAFGHEKEKQAKLVAIGKEIIKKCGGLPLAAQALGGLMHSRTTEKEWLEIKDSELWTLPDENMILPALRLSYTYLTPTLKQCFSFCAIFPKDTEMNKEDLIHLWMANGFISSRENLEVEDVGNMVWNELCQKSFFQDIKIDAHSEDISFKMHDLVHDLAQLVTGPECMIIKNTNIDLSRSTHHISFDYRNLVSINKETFRNIESLRTLYGLKTYDCHTFFPSCHFPNNNSLRVLLICSAMLESVESFTHLRYLELYGFSNLEPISNSIHTLRYLEILKFKSFWKIRYLPKNLSRLQNLRHLVIEDCHVLSSIFPNIGKLCCLRTLSVFIVRRKIGYSLAELRDLQLGGKLRIEGLKNVDSSSEAREANLMGKKDLQELCLSWSKGTEGPSTSAEEVIEALQPHSNLKRLKIDLYDGISLPSWISMLSNLASLELSSCDNCVLLSPLGKLPSLKKIRLHQMNNVLYMNEDEPHHGLEETFFPYLEELYLDGLPNLERLLKVQRGEIFPHLSSFTIINCPKLVLPNLSFVKYLFVDGCNKELLRQISSFYDLTTLHLTKNEDVTSLPEDMLRNLTSLQTLTISDFLKLMELPNEPFNLALEHLCITRCGELESLPELIWEGLQSLRTIDIIDCEGLRSLPEGIRHLTSLEILTIQGCSTLKKRCEEVLGEDWDKIAHIQKLLIW 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00929 1015 Gene3D Ribonuclease Inhibitor 854 1001 IPR032675 -
Vifa1g00929 1015 Pfam NB-ARC domain 158 385 IPR002182 GO:0043531
Vifa1g00929 1015 SUPERFAMILY RNI-like 813 1001 - -
Vifa1g00929 1015 CDD RX-CC_like 2 119 IPR038005 -
Vifa1g00929 1015 Gene3D Ribonuclease Inhibitor 519 853 IPR032675 -
Vifa1g00929 1015 FunFam Probable disease resistance protein At1g63360 405 494 - -
Vifa1g00929 1015 Gene3D - 138 317 IPR027417 -
Vifa1g00929 1015 PANTHER DISEASE RESISTANCE PROTEIN RP 32 831 IPR044974 GO:0006952
Vifa1g00929 1015 PRINTS Disease resistance protein signature 180 195 - -
Vifa1g00929 1015 PRINTS Disease resistance protein signature 975 991 - -
Vifa1g00929 1015 PRINTS Disease resistance protein signature 357 371 - -
Vifa1g00929 1015 PRINTS Disease resistance protein signature 253 267 - -
Vifa1g00929 1015 Gene3D - 321 403 IPR042197 -
Vifa1g00929 1015 Gene3D - 6 118 - -
Vifa1g00929 1015 Coils Coil 31 51 - -
Vifa1g00929 1015 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 419 IPR027417 -
Vifa1g00929 1015 SUPERFAMILY L domain-like 483 850 - -
Vifa1g00929 1015 Pfam Rx N-terminal domain 6 97 IPR041118 -
Vifa1g00929 1015 Gene3D - 404 494 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00929 Vifa-Chr1 156613005 156616052 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00929 183 660 WRKY Transcription Factor Family AT5G45050 22.180 3.74e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00929 - - mtr:11405813 1201.81