Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00927 ATGTGCCAAAAACTTCCTTCTAGTGAGGTTCCTACTATTCTCAACTGTCATGGTAAGAGCTGGGACATGGCTTATAATGGGCAAAACAAATACAAGCAGTTTGATACAATTGGCTGGAGAAACTTTGTTAAAGATAATAATTTGAAGGTCGGAGACATGTGCGTTTTTGAGCTTAAGGAAAACAGTGAAGAGAAAATCGTCTTTGAAGTTCAAATTCTTAGAGGTGAATTTCCTGGGACTGATGAATGTGAAGAAGATCAGATTTTTGTATCCGGATTTTCTGGTACCGGTGAGAATGATTCACCATATGTCATCGACTAA 321 0.3801 MCQKLPSSEVPTILNCHGKSWDMAYNGQNKYKQFDTIGWRNFVKDNNLKVGDMCVFELKENSEEKIVFEVQILRGEFPGTDECEEDQIFVSGFSGTGENDSPYVID 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00927 106 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 5 76 IPR044837 -
Vifa1g00927 106 Gene3D - 2 76 IPR015300 -
Vifa1g00927 106 ProSiteProfiles B3 DNA-binding domain profile. 1 76 IPR003340 GO:0003677
Vifa1g00927 106 SUPERFAMILY DNA-binding pseudobarrel domain 9 74 IPR015300 -
Vifa1g00927 106 SMART B3_2 2 76 IPR003340 GO:0003677
Vifa1g00927 106 CDD B3_DNA 12 74 IPR003340 GO:0003677
Vifa1g00927 106 Pfam B3 DNA binding domain 12 69 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00927 Vifa-Chr1 156611808 156612128 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00927 13 76 REM Transcription Factor Family AT4G33280 36.364 1.45e-07 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa1g00927 B3 5.7e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00927 - - psat:127100519 186.422