Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g00925 | ATGAAGTGGGAAATGGAACTCGTAACTCCTACATCATACACTTCAAACTCCAATTGGTGTATGGAAGAAAACAGAAGCACAAAATGGAGTCATGAGGAGAACAAGCTATTTGAAAATGCTCTTGCAGTTTACGACAGAGATACTCCAGATCGGTGGCATAAAGTCGCGGAAATGATACCGGGGAAAACAGCTGGTGATGTTATGAGACAGTACAAGGAATTGGAAGATGATGTTTGTAATATAGAAGCTGGTTTGATACCAGTTCCTGGATATAGTGCTCCTACTTCACCTTTTACCTTAGATTGGGTGGGCAATTCTGGTTATGATGCTTCCAAAGGAAATGGAAAGAGATCTTCTTTAGTTAGAGCTCCTGAGCATGAAAGGAAGAAAGGTGTGCCATGGACTGAAGAAGAACACAAATTATTTCTACTAGGTCTAAAGAAATATGGCAAAGGTGATTGGAGAAATATTTCGCGCAATTTCGTTGTCACTAGGACTCCAACTCAAGTGGCAAGCCATGCTCAAAAGTATTTCATAAGACAACTTTCAGGAGGCAAAGACAAGAGAAGGGCTAGCATTCATGACATAACAACAGTGAATCTCACAGAAAAAATTGGATCTTGCTCTTCGGAAGACACCAATGATAGGTCTACTTCGCCGCAGAATTCCATGTTACTCTCACACCAACAACATCAACAGCAATCAAGTTCTAGTACTACAACAAATTTTCTTTGGAGGAATGATCAGCAAAATTCAATGGTTTTCAATCCAGCTCATGAGCAAGTCTTCATGCCTCCTCATGGTGTTAACTCCTATGAGATTAAAATGGAAGAGGGTTTTGTTCATGAGTCTTCTTATCCACATAACATGGTTTTCCAAATGCAACATCCATCCCAACATTATTCACATGCATAA | 915 | 0.3989 | MKWEMELVTPTSYTSNSNWCMEENRSTKWSHEENKLFENALAVYDRDTPDRWHKVAEMIPGKTAGDVMRQYKELEDDVCNIEAGLIPVPGYSAPTSPFTLDWVGNSGYDASKGNGKRSSLVRAPEHERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTEKIGSCSSEDTNDRSTSPQNSMLLSHQQHQQQSSSSTTTNFLWRNDQQNSMVFNPAHEQVFMPPHGVNSYEIKMEEGFVHESSYPHNMVFQMQHPSQHYSHA | 304 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g00925 | 304 | CDD | SANT | 133 | 178 | IPR001005 | - | |
Vifa1g00925 | 304 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 129 | 181 | IPR006447 | GO:0003677 | |
Vifa1g00925 | 304 | SUPERFAMILY | Homeodomain-like | 27 | 82 | IPR009057 | - | |
Vifa1g00925 | 304 | PANTHER | DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 22 | 261 | IPR043363 | - | |
Vifa1g00925 | 304 | Pfam | Myb-like DNA-binding domain | 133 | 178 | IPR001005 | - | |
Vifa1g00925 | 304 | Pfam | Myb-like DNA-binding domain | 28 | 72 | IPR001005 | - | |
Vifa1g00925 | 304 | ProSiteProfiles | SANT domain profile. | 24 | 77 | IPR017884 | - | |
Vifa1g00925 | 304 | MobiDBLite | consensus disorder prediction | 206 | 240 | - | - | |
Vifa1g00925 | 304 | FunFam | Transcription factor SRM1 | 15 | 88 | - | - | |
Vifa1g00925 | 304 | ProSiteProfiles | Myb-like domain profile. | 21 | 75 | IPR001005 | - | |
Vifa1g00925 | 304 | CDD | SANT | 28 | 74 | IPR001005 | - | |
Vifa1g00925 | 304 | ProSiteProfiles | SANT domain profile. | 134 | 182 | IPR017884 | - | |
Vifa1g00925 | 304 | Gene3D | - | 20 | 88 | - | - | |
Vifa1g00925 | 304 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 126 | 182 | IPR017930 | - | |
Vifa1g00925 | 304 | FunFam | transcription factor MYB1R1 | 132 | 183 | - | - | |
Vifa1g00925 | 304 | SUPERFAMILY | Homeodomain-like | 128 | 181 | IPR009057 | - | |
Vifa1g00925 | 304 | SMART | sant | 130 | 180 | IPR001005 | - | |
Vifa1g00925 | 304 | SMART | sant | 25 | 77 | IPR001005 | - | |
Vifa1g00925 | 304 | Gene3D | - | 132 | 182 | - | - | |
Vifa1g00925 | 304 | ProSiteProfiles | Myb-like domain profile. | 126 | 178 | IPR001005 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g00925 | Vifa-Chr1 | 156000959 | 156002232 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB | Vifa1g00925 | Myb_DNA-binding | 1.4e-12 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g00925 | - | - | gmx:778034 | 403.29 |