Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00925 ATGAAGTGGGAAATGGAACTCGTAACTCCTACATCATACACTTCAAACTCCAATTGGTGTATGGAAGAAAACAGAAGCACAAAATGGAGTCATGAGGAGAACAAGCTATTTGAAAATGCTCTTGCAGTTTACGACAGAGATACTCCAGATCGGTGGCATAAAGTCGCGGAAATGATACCGGGGAAAACAGCTGGTGATGTTATGAGACAGTACAAGGAATTGGAAGATGATGTTTGTAATATAGAAGCTGGTTTGATACCAGTTCCTGGATATAGTGCTCCTACTTCACCTTTTACCTTAGATTGGGTGGGCAATTCTGGTTATGATGCTTCCAAAGGAAATGGAAAGAGATCTTCTTTAGTTAGAGCTCCTGAGCATGAAAGGAAGAAAGGTGTGCCATGGACTGAAGAAGAACACAAATTATTTCTACTAGGTCTAAAGAAATATGGCAAAGGTGATTGGAGAAATATTTCGCGCAATTTCGTTGTCACTAGGACTCCAACTCAAGTGGCAAGCCATGCTCAAAAGTATTTCATAAGACAACTTTCAGGAGGCAAAGACAAGAGAAGGGCTAGCATTCATGACATAACAACAGTGAATCTCACAGAAAAAATTGGATCTTGCTCTTCGGAAGACACCAATGATAGGTCTACTTCGCCGCAGAATTCCATGTTACTCTCACACCAACAACATCAACAGCAATCAAGTTCTAGTACTACAACAAATTTTCTTTGGAGGAATGATCAGCAAAATTCAATGGTTTTCAATCCAGCTCATGAGCAAGTCTTCATGCCTCCTCATGGTGTTAACTCCTATGAGATTAAAATGGAAGAGGGTTTTGTTCATGAGTCTTCTTATCCACATAACATGGTTTTCCAAATGCAACATCCATCCCAACATTATTCACATGCATAA 915 0.3989 MKWEMELVTPTSYTSNSNWCMEENRSTKWSHEENKLFENALAVYDRDTPDRWHKVAEMIPGKTAGDVMRQYKELEDDVCNIEAGLIPVPGYSAPTSPFTLDWVGNSGYDASKGNGKRSSLVRAPEHERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTEKIGSCSSEDTNDRSTSPQNSMLLSHQQHQQQSSSSTTTNFLWRNDQQNSMVFNPAHEQVFMPPHGVNSYEIKMEEGFVHESSYPHNMVFQMQHPSQHYSHA 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00925 304 CDD SANT 133 178 IPR001005 -
Vifa1g00925 304 NCBIfam myb-like DNA-binding domain, SHAQKYF class 129 181 IPR006447 GO:0003677
Vifa1g00925 304 SUPERFAMILY Homeodomain-like 27 82 IPR009057 -
Vifa1g00925 304 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 22 261 IPR043363 -
Vifa1g00925 304 Pfam Myb-like DNA-binding domain 133 178 IPR001005 -
Vifa1g00925 304 Pfam Myb-like DNA-binding domain 28 72 IPR001005 -
Vifa1g00925 304 ProSiteProfiles SANT domain profile. 24 77 IPR017884 -
Vifa1g00925 304 MobiDBLite consensus disorder prediction 206 240 - -
Vifa1g00925 304 FunFam Transcription factor SRM1 15 88 - -
Vifa1g00925 304 ProSiteProfiles Myb-like domain profile. 21 75 IPR001005 -
Vifa1g00925 304 CDD SANT 28 74 IPR001005 -
Vifa1g00925 304 ProSiteProfiles SANT domain profile. 134 182 IPR017884 -
Vifa1g00925 304 Gene3D - 20 88 - -
Vifa1g00925 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 126 182 IPR017930 -
Vifa1g00925 304 FunFam transcription factor MYB1R1 132 183 - -
Vifa1g00925 304 SUPERFAMILY Homeodomain-like 128 181 IPR009057 -
Vifa1g00925 304 SMART sant 130 180 IPR001005 -
Vifa1g00925 304 SMART sant 25 77 IPR001005 -
Vifa1g00925 304 Gene3D - 132 182 - -
Vifa1g00925 304 ProSiteProfiles Myb-like domain profile. 126 178 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00925 Vifa-Chr1 156000959 156002232 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g00925 Myb_DNA-binding 1.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00925 - - gmx:778034 403.29