Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00913 ATGTTTGGCAATGAAAATATAAATACCAATGACCCTTTCATGGATAGATCTTTATATGGCCAAATGATTCATTACCCTAACCATCAAGAGAATAATTCAATTGCATTTCCTTACTCTTATGGTTCAAATTGTGATGAGTTTATGTGGCCAAATACTCAAGAATCAAGCTTTGGTGTTGATCATGGAGTCTTAGCAAATGAAGAGGCTTTGAAGTGGACTAACTTCGACCAAACCTCAACATTGTGCCTTAAGGATGCTAATGGCTATGGTGACAACACAAAAATTGTGGGAAAGAAAGGTAAGAAAGAGAAAGAGAAAGAGACTTCTATGGTTTGGATCAAAGGACAATGGACTGATGATGAAGACAGGAAACTGATAAGGTTGGTGAAAGAAAATGGTGAAGGAAAATGGACTCAAATAGCTGAGAAGTTAGAAGGAAGGGTTGGCAAGCAGTGTAGAGAGCGATGGCATAATCATTTGCGTCCTAATATTAAGAAAGATAGTTGGAGTGAAGAAGAAGAGAGGATATTAGTAGCCATGCATGCAAAAATTGGAAATAGATGGGCTGAGATAGCAAAGAGGATTCCAGGAAGAACTGAAAATGCCATAAAGAATCATTGGAATGCAACTAAAAGAAGACAAAACTCAAAAAGAAAAAACAAGAGGAAGATAGAAACTTCCAATGGATCAAACCCTAAGTCCTCCATACTTGAGGACTATATCAAAAACACTATCACTACTACAATTACCAACATACCCTCTTCCACTCACACAACATTCTCCCAAAACCTTGAACAAAATCATTCAAACCCTAACCCTAACCCTAACCCTAACCCTTTCTTCAATGGACTACCCTCTGATTCTTTTTCCAATGAATATTTGGGGTTTTTTCAAGGTAACATTGTTGATGATGTGGATGAGAGTGGTCTTGTTAATTCAGTGCAATATCCAAATTACAACATGCACTTGGATTATGAAACTACTCGAGCTAATCATATCAATAATTTCCTTTCTTATGATCTCTACCTCTCTCAATTGTTGAATTAA 1047 0.3668 MFGNENINTNDPFMDRSLYGQMIHYPNHQENNSIAFPYSYGSNCDEFMWPNTQESSFGVDHGVLANEEALKWTNFDQTSTLCLKDANGYGDNTKIVGKKGKKEKEKETSMVWIKGQWTDDEDRKLIRLVKENGEGKWTQIAEKLEGRVGKQCRERWHNHLRPNIKKDSWSEEEERILVAMHAKIGNRWAEIAKRIPGRTENAIKNHWNATKRRQNSKRKNKRKIETSNGSNPKSSILEDYIKNTITTTITNIPSSTHTTFSQNLEQNHSNPNPNPNPNPFFNGLPSDSFSNEYLGFFQGNIVDDVDESGLVNSVQYPNYNMHLDYETTRANHINNFLSYDLYLSQLLN 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00913 348 Gene3D - 167 237 - -
Vifa1g00913 348 ProSiteProfiles Myb-like domain profile. 161 211 IPR001005 -
Vifa1g00913 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 164 IPR017930 -
Vifa1g00913 348 SMART sant 113 162 IPR001005 -
Vifa1g00913 348 SMART sant 165 213 IPR001005 -
Vifa1g00913 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 165 215 IPR017930 -
Vifa1g00913 348 MobiDBLite consensus disorder prediction 259 284 - -
Vifa1g00913 348 PANTHER MYB PROTEIN-RELATED 102 235 - -
Vifa1g00913 348 CDD SANT 168 211 IPR001005 -
Vifa1g00913 348 Pfam Myb-like DNA-binding domain 117 174 - -
Vifa1g00913 348 MobiDBLite consensus disorder prediction 204 235 - -
Vifa1g00913 348 FunFam Transcriptional activator Myb isoform A 113 166 - -
Vifa1g00913 348 CDD SANT 117 160 IPR001005 -
Vifa1g00913 348 Gene3D - 113 165 - -
Vifa1g00913 348 SUPERFAMILY Homeodomain-like 113 207 IPR009057 -
Vifa1g00913 348 ProSiteProfiles Myb-like domain profile. 114 160 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00913 Vifa-Chr1 154457736 154459040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00913 105 348 MYB Transcription Factor Family AT5G58850 48.162 2.13e-64 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g00913 Myb_DNA-bind_6 8.7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00913 K09422 - aprc:113874412 280.411