Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00888 ATGGTAACAAACTCAGTTTTCTATTTATGTAATGTCATAACCCTTCCCTTATTTCCTTCATCTTTGTACCCCCTAATTTCACCTTCCACCTCCATAATTCCTCGCCGGAGCTTCTACACCTCATCTTCTTGGACGCTGTGGATATCTTTTTGCTATAATAGGATGTTGGATCACCAATCTGGCCAGGGGTTTGTTTCAGATGGTGAAGCTGAAAATTTTGTGGAACAACCTGTACCAGATTCAGACACATTAGAACCATTCATAGACATGCAGTTCAACTCAAGGGAGGAAGCCAGAGAATTCTACAATGCCTATGGTAGGCGGATGGGATTTACAGTACGAGTACACCATAACCGACGTTCACGAGTAAATAACCAGATTATTAGTCAAGATTTTGTTTGCTCAAAAGAAGGCTTTCGTGCAAAGAAGTATGTGCACAGAAAAGATAGAGTGCTCCCTCCTCCACCAGCCACCCGAGAAGGTTGTCAAGCCATGATAAGGCTGGCTTTACGGGATGAAGGGAAGTGGGTTATCACCAAAGTTGTGAAGGAGCATACACATAAACTGATGAGTCCTAGTGAAGTTCCACGGCGGAGATCTGAGAAGCACTTGGTTAGTGAGGATGAGAAAGATAAGAGAATCCGTGAGCTATCGCTTCAGTTGTACAACGAAAGGCAGAAGTACAAACGACGTCGTGCAGCATATGAAGAACAGTTAAATATGATTCTGAACGATTTGGAAAAGCACACAGAACACATCTCTAAAAAAGTTGCTGATGTAGTCCGAAATATAAGAGAGATTGAGGAAGAAAGATCAGATTCAAAAGGCAAGTAA 834 0.4221 MVTNSVFYLCNVITLPLFPSSLYPLISPSTSIIPRRSFYTSSSWTLWISFCYNRMLDHQSGQGFVSDGEAENFVEQPVPDSDTLEPFIDMQFNSREEAREFYNAYGRRMGFTVRVHHNRRSRVNNQIISQDFVCSKEGFRAKKYVHRKDRVLPPPPATREGCQAMIRLALRDEGKWVITKVVKEHTHKLMSPSEVPRRRSEKHLVSEDEKDKRIRELSLQLYNERQKYKRRRAAYEEQLNMILNDLEKHTEHISKKVADVVRNIREIEEERSDSKGK 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00888 277 Pfam FAR1 DNA-binding domain 100 190 IPR004330 -
Vifa1g00888 277 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 71 270 - -
Vifa1g00888 277 Coils Coil 218 252 - -
Vifa1g00888 277 MobiDBLite consensus disorder prediction 188 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00888 Vifa-Chr1 149854713 149857327 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vifa1g00888 FAR1 1.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00888 - - gmx:100810283 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00888 1 149854713 149857327 Vifa1g00888 1 149854713 149857327 ECH