Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00885 ATGGGGTTCTCAAAAAAACAATTCTCGACCTACCTTTTGAATACTATATTATTTAAGGTGGTTGTTTTTTCATGGCTATGGTTACATGTTACAAGTCTTGGTTCCATGTCATCAATTGCTGTTTCTTATGGAGATAAAGGTTCGGCTTTCTGTGGTTTGAAATCTGATGGATCTCATACTGTGACATGTTATGGATTCAATTCGGCTATAGTTTATGGTACACCGTCTCATTTTCCGTTTATTGGTTTAACTTCGGGCGATGGTTTTGTTTGCGGACTTTTGATGAGTTCGAATCAACCATATTGTTGGGGGAGTAGTAGCCATATAGAAATGGGTGTGCCACAACCTATGGTTAAAGGAGCTCAGTATTTAGAAATCAGTGCCGGGGATTATCATGTTTGTGGATTGAGGAAGCCTTTAACAGGAAGGTTCAGGAACATTTCTTTTGTTGATTGTTGGGGGTATAACATGACGAATAACTATGTGTTCGATGGACAGATTCAATCGATTTCGGCGGGTTCTGAGTTCAATTGTGGACTCTTTTCGCAGAATAGGACGGTTTTTTGTTGGGGTGATGAGGTTAGTAGTCAAGTTATTAGGTTGATTCCTCGCGGTATGAGATTTCAGAAGGTGTCTTGTGGAGGGTATCATGTGTGTGGAATCTTGGAAGGTGTGAATTCCAGAACAGTTTGTTGGGGGAGGAGTTTGGATATGGAGGAAGAGATTTCATTGATTCCTAATCAAGGACAAGGTGGTAGTGTTGAGTTGGCACCAAATGATTCTATGCTTAGTGTTGTTGGAGGAAAGTTTCATGCTTGTGGAATTAAGAGCTATGATCATGGTGTGATTTGTTGGGGTTTGAGTTTGAAAACAAGCACATCAGTTCCTAAAGGGATTAAAGTGTTTGAAGTTGCAGCTGGTAATTATTTTACTTGTGGAATTCTCGCTGCGAAATCGCTTGAACCTATTTGTTGGGGTGTTGGATTTCCAACTTCTCTACCTTTGGCTGTTTCACCAAGAACAAGAAAGTGTTTCTCTGAACCTTGTCCTCCAAGTTACTATGAAATTGAAAAGGATCAACAAAAGGGTCTAATTTGTAAGGATTTGAATTCTCACCTTTGTGTTCCATGCAGTGGTGTTTGTCCTGATGAAATGTATCAGAAAAGTGGTTGTGATTTGAAATCTGATATATTGTGTGAATATAATTGTTCGGTTTGTTCTTCGCCGGAATGTTTCTCGAATTGTTCCTCCTCTTCTTCTTATTCCAATGGTGATAATGGGAAGAAAAGTGAACGATTTTGGTCTATGCAGTTGATAGTTGTTGTTTCTGAGATAGTGTTTGTTGTTTTCATAGTTAGTGCTGCGTCGATAACCGCAGTTATGTATGTTCGCTACAAGCTGAGAGACTGTGAATGTTCAACAACAGCGTTAAACTCGACGAAGAGACTCAATGTTGGTTCTTCGGTACAAAAGGATAACGGAAGGATTCGCCCGGACGGGGAGGAGTTTAAGATAAGGAGAGCTCAGAAGTTCACCTATGAGGAACTTGAAAATGCAACTAGTGGATTCAAAGAAGAATCCATTGTAGGTAAAGGAAGTTTCTCTTGTGTGTTCAAAGGTGTTCTCAAAGATGGAACGGTTGTTGCTGTTAAAAGGGCTATTATGTCACCAAACATGCAGAAAAATTCGAAAGAGTTTCACACAGAACTTGACTTGCTATCTCGGTTGAATCATGCGCATTTGCTCAATTTATTAGGCTATTGCGAAGAAGGTGGCGAAAGACTACTTGTTTATGAGTACATGGCTCATGGATCATTGCATCAACACCTCCATGGCAAAAACAAAGAGTTGAAAGAGCAAATGGATTGGATAAGAAGGGTAACAATCGCGGTCCAAGCCGCGCGAGGAATCGAGTACTTACACGGCTACGCGTGTCCACCGGTTATCCATAGAGATATCAAATCTTCAAACATACTAATAGACGAAGAACACAATGCTCGAGTTTCGGATTTCGGTTTATCGTTACTTGGTCCAACAGATAGTAGCTCCCCGTTGGCCGAGTTACCAGCGGGGACGCTCGGTTATCTCGACCCCGAGTACTATAGACTTCACTACCTCACAACAAAATCAGATGTCTATAGCTTTGGTGTTCTACTATTAGAAATCCTAAGTGGTAGAAAAGCTATTGATATGCAATATGAAGAAGGTAACATTGTTCAATGGTCGGTACCGTTAATAAAATCGGGCGACATTGCTTCGATCTTAGACCCTTGTTTGAAACAACCTTCTGATATTGAAGCATTGAAAAGGATAGCAAATGTTTCTTCTAAATGTGTAAGAATGAGAGGTAAAGATAGGCCTTCAATGGACAAAGTAACAACAAGTTTGGAAAGAGCATTAGCAATGCTAATGGGAAGTCCTTGTATTGATCAACCAATTCTACCAACAGAAGTTGTTTTAGGAAGTAATAGAATGCATAAGAAAACATCTCAAAGATCGTCGAATCGGTCGGCTTCAGAAACCGATGTGGTCGAAGGCGAAGATCAAAGGTTTGAGTTTAGAGCACCTTCTTGGATAACTTTTCCAAGTGTTACTTCTTCTCAAAGAAGAAAATCTTCAGAATCAGAAGGTGAAGTTGAAGTGAAGATTGAAGGAAGAAACTTTGTTGGTGGTGGTGATGTTTTGAGAAGCCTTGAAGAAGAGATTGGCCCTGCTTCTCCTCAAGAGAGACTCTTCTTGCAACATAACTTTTGA 2754 0.402 MGFSKKQFSTYLLNTILFKVVVFSWLWLHVTSLGSMSSIAVSYGDKGSAFCGLKSDGSHTVTCYGFNSAIVYGTPSHFPFIGLTSGDGFVCGLLMSSNQPYCWGSSSHIEMGVPQPMVKGAQYLEISAGDYHVCGLRKPLTGRFRNISFVDCWGYNMTNNYVFDGQIQSISAGSEFNCGLFSQNRTVFCWGDEVSSQVIRLIPRGMRFQKVSCGGYHVCGILEGVNSRTVCWGRSLDMEEEISLIPNQGQGGSVELAPNDSMLSVVGGKFHACGIKSYDHGVICWGLSLKTSTSVPKGIKVFEVAAGNYFTCGILAAKSLEPICWGVGFPTSLPLAVSPRTRKCFSEPCPPSYYEIEKDQQKGLICKDLNSHLCVPCSGVCPDEMYQKSGCDLKSDILCEYNCSVCSSPECFSNCSSSSSYSNGDNGKKSERFWSMQLIVVVSEIVFVVFIVSAASITAVMYVRYKLRDCECSTTALNSTKRLNVGSSVQKDNGRIRPDGEEFKIRRAQKFTYEELENATSGFKEESIVGKGSFSCVFKGVLKDGTVVAVKRAIMSPNMQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEYMAHGSLHQHLHGKNKELKEQMDWIRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVSDFGLSLLGPTDSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVQWSVPLIKSGDIASILDPCLKQPSDIEALKRIANVSSKCVRMRGKDRPSMDKVTTSLERALAMLMGSPCIDQPILPTEVVLGSNRMHKKTSQRSSNRSASETDVVEGEDQRFEFRAPSWITFPSVTSSQRRKSSESEGEVEVKIEGRNFVGGGDVLRSLEEEIGPASPQERLFLQHNF 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00885 917 SUPERFAMILY Protein kinase-like (PK-like) 504 796 IPR011009 -
Vifa1g00885 917 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 16 917 - -
Vifa1g00885 917 Gene3D Phosphorylase Kinase; domain 1 496 600 - -
Vifa1g00885 917 FunFam serine/threonine-protein kinase-like protein CCR1 493 600 - -
Vifa1g00885 917 Pfam Protein tyrosine and serine/threonine kinase 526 795 IPR001245 GO:0004672|GO:0006468
Vifa1g00885 917 ProSiteProfiles Protein kinase domain profile. 523 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00885 917 Gene3D - 83 344 IPR009091 -
Vifa1g00885 917 SMART serkin_6 523 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00885 917 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 348 399 IPR001368 GO:0005515
Vifa1g00885 917 MobiDBLite consensus disorder prediction 824 847 - -
Vifa1g00885 917 ProSitePatterns Serine/Threonine protein kinases active-site signature. 648 660 IPR008271 GO:0004672|GO:0006468
Vifa1g00885 917 ProSitePatterns Protein kinases ATP-binding region signature. 529 551 IPR017441 GO:0005524
Vifa1g00885 917 SUPERFAMILY RCC1/BLIP-II 31 287 IPR009091 -
Vifa1g00885 917 MobiDBLite consensus disorder prediction 824 840 - -
Vifa1g00885 917 FunFam Receptor protein kinase CRINKLY4 601 803 - -
Vifa1g00885 917 FunFam Serine/threonine-protein kinase-like protein CR4 32 199 - -
Vifa1g00885 917 Gene3D Transferase(Phosphotransferase) domain 1 601 804 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00885 Vifa-Chr1 149008071 149010824 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00885 16 917 Receptor kinase-like Gene Family AT3G59420 67.217 0.0 1228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vifa1g00885 PK_Tyr_Ser-Thr 3.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00885 - - gmx:100809215 1427.92