Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00884 ATGCCAGAGACAATTGTGACTTTTCACTTGGTGAAGAAGCACCCTCAGGATTTTCCCTCATTTCTCATGGAGTTTGAGATTGATAACTCCAGTAATGGTGATGTAGTAGGAAATGTTACTACTGGAGAGGTTAGCAGTAGCGTAGCTGACAAAGACAAAGTTGATTGCAGTTCTTTCGATCCAACTGATGAACAGGATCAAGATGATAATATGACTCAAGATTCTTCTGGAGTGGACCAAATCCCGTTAGCGATTCCTGCATTATCGGCTGTGAGAACAGTTGATGAACCCTATATGGGTCAGGAGTTTGTATCGGAAGCTGAAGCACATGCATTTTATAATGCGTATGCGACACGTGTTGGATTCGTCATACGTGTAAGTAAGCTCTCAAGGTCAAGGCGTGATGGGTCTGTTATCGGACGGGCTCTTGTTTGTAATAAAGAAGGTTTCAGAATGCCTGACAAGCGGGAAAAGATTGTAAGGCAGAGGGCAGAAACAAGGGTTGGTTGCAGGGCAATGATTATGGTGAGGAAATTAAATTCTGGTCTATGGTCTATAACAAAGTTTGTAAAGGAGCACACACATCCTCTGACACCTGGAAGAGGCAGAAGGGACTTCGTTTATGAGCAATATCCGAGTGGACATGACAGAGTTCGAGAACTCTCTCAGCAGTTGGCTCTAGAGAAAAAGCGATCTGCAACCTATAAAAGGAATCTTGAATTGTTATATGAGTACATTGAGGAGCATAATGAATCCGTTACTAGGAAGATACAACACATAGTAGAGAGTGTGAAGGAGATGGAAGCCAACGAACAAGACAGTCTTAGATAG 831 0.4272 MPETIVTFHLVKKHPQDFPSFLMEFEIDNSSNGDVVGNVTTGEVSSSVADKDKVDCSSFDPTDEQDQDDNMTQDSSGVDQIPLAIPALSAVRTVDEPYMGQEFVSEAEAHAFYNAYATRVGFVIRVSKLSRSRRDGSVIGRALVCNKEGFRMPDKREKIVRQRAETRVGCRAMIMVRKLNSGLWSITKFVKEHTHPLTPGRGRRDFVYEQYPSGHDRVRELSQQLALEKKRSATYKRNLELLYEYIEEHNESVTRKIQHIVESVKEMEANEQDSLR 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00884 276 Coils Coil 250 270 - -
Vifa1g00884 276 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 30 271 - -
Vifa1g00884 276 Pfam FAR1 DNA-binding domain 112 198 IPR004330 -
Vifa1g00884 276 Coils Coil 218 238 - -
Vifa1g00884 276 MobiDBLite consensus disorder prediction 53 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00884 Vifa-Chr1 149004536 149006703 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vifa1g00884 FAR1 2.4e-30 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00884 - - gmx:100806900 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00884 1 149004536 149006703 Vifa1g00884 1 149004536 149006703 ECH