Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00874 ATGAAAATTCAGTGTGATGTTTGTGAGAAAGCTCCAGCAACAATGATTTGTTGTGCAGATGAAGCAGCTTTGTGTGCTAAATGTGATATTGAAGTTCATGCTGCTAACAAGCTTGCAAGCAAACACCAGAGGCTTCTTCTTCAATCCCTCTCTAACAAGCTTCCTAGATGTGACATATGCCAAGATAAGGCAGCTTTCATATTCTGTGTAGAAGATAGAGCACTCTTCTGTCAGAATTGTGATGAAGCTATTCACCCCGCCGGCAGTCTTTCTGCCAACCATCAGCGCTTCCTCGCGACCGGTATTCGAGTGGCTGCCGCGAGTACTAACTGCGCCAAAGACGACGAAAAGCCTCACTTTGAACCACCAAGCAGGAATCCTCAACAAGTTTCTGTTGAACCTCCTTCTCAACAAGTCCCCAACTTCTCACCCTCTTGGGGTGTTGATGACTTACTGGAGTTAGCAGATTATGATTCACATAACAAAAAGGAATCCATGCAATTTGGAGAAATGGAATGGTTCACTGAGGAGGGACTGTTTGGTGAAGAGTTTAATCAAGAAGCTATTTCTGCAGCTGAAGTTCCTCAGCTTCCAGTGACTCATCATGCTAGCAACCATTATTCGTCACACAGAAACTCAAAGTCTAACAAAAAGCCGAGAATCGAACTCATACGTGATTATGATTATGATGATGAAGATGAGTACTTCACAGTGCCTGATCTTGGATGA 729 0.4362 MKIQCDVCEKAPATMICCADEAALCAKCDIEVHAANKLASKHQRLLLQSLSNKLPRCDICQDKAAFIFCVEDRALFCQNCDEAIHPAGSLSANHQRFLATGIRVAAASTNCAKDDEKPHFEPPSRNPQQVSVEPPSQQVPNFSPSWGVDDLLELADYDSHNKKESMQFGEMEWFTEEGLFGEEFNQEAISAAEVPQLPVTHHASNHYSSHRNSKSNKKPRIELIRDYDYDDEDEYFTVPDLG 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00874 242 Gene3D Classic Zinc Finger 1 119 - -
Vifa1g00874 242 Pfam B-box zinc finger 52 94 IPR000315 GO:0008270
Vifa1g00874 242 CDD Bbox1_BBX-like 5 47 - -
Vifa1g00874 242 MobiDBLite consensus disorder prediction 200 221 - -
Vifa1g00874 242 MobiDBLite consensus disorder prediction 113 142 - -
Vifa1g00874 242 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 241 - -
Vifa1g00874 242 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vifa1g00874 242 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vifa1g00874 242 SMART bboxneu5 52 99 IPR000315 GO:0008270
Vifa1g00874 242 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Vifa1g00874 242 CDD Bbox1_BBX-like 57 98 - -
Vifa1g00874 242 MobiDBLite consensus disorder prediction 124 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00874 Vifa-Chr1 147651901 147653048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00874 1 162 Orphan Transcription Factor Family AT1G06040 62.941 1.79e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vifa1g00874 zf-B_box 3.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00874 - - vun:114183169 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00874 1 147651901 147653048 Vifa1g00874 1 147651901 147653048 ECH
Vifa1g00874 1 147651901 147653048 Vifa6g00903 6 306945463 306946996 PCT