Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00870 ATGAGTTTTTTCTCTGAGACTAATTCGCGACCGATATTTCCTAGCATGAATGTGAATGAAGATTTGGAGAATAAGGTTGATTCAGTAGAGAACATTTCATCGAGTTCGATTGTGAGAAAGAAATCGGATATAGCTTTGGTGACGAATAATGATCGGTTTCAGATAGTTAGAAATGTGATGGGAAATGTGAGAGAGGTGATGTTGGGTACTAAGCTTGTTGTGCTTTTTCCGGCGGTTCCTTTGGCTGTTGCTGCTGATTTTTATAGCATTGGAAGGCCTTGGATTTTTGCTTTGAGCCTACTTGGACTTGCTCCCCTGGCTGAACGTGTCAGCTTCCTCACTGAGCAAATTGCATATTTCACTGGCCCAACAGTTGGAGGACTTCTAAATGCAACTTGTGGCAATGCAACTGAGATGATCATAGCAATATTAGCACTTCATCAGAACAAAATCCATGTTGTCAAGTTCTCCTTGCTTGGTTCCATTCTCTCAAACCTTCTTTTGGTCCTAGGAAGCTCACTCCTTTGTGGTGGCTTAGCAAATCTCAAAAGGGAACAAAGATATGACAGAAAACAAGCGGATGTGAACTCATTGCTTTTGTTGTTGGGATTTCTATGCCATTTGCTGCCGTTAATTTTCAAATACGCATTGGCGGGAGGAAATCATTCTATCGCCAATTGTACTCTTCAATTGTCGAGAGCGAGTAGCATTGTTATGCTTATTGCATATGTTGCATATATCTTCTTCCAATTGAAAACTCATCGAAAAATATTTGATGCACAAGAGGTGGAAGATGAGGAGGATGAAGAAAAAGCAGTGATTGGATTTTGGAGTGCATTCAGTTGGTTGGTAGGTATGACATTGGTCATATCTGTGCTTTCGGAGTATGTTGTGGGAACCATTGAGGCTGCTTCAGATTCTTGGGGAATTTCTGTGAGCTTTATTAGCATAATTTTGCTACCAATTGTTGGTAACGCGGCGGAACATGCTGGATCAGTCATATTTGCTTTCAAGAACAAGTTGGATATATCATTAGGTGTTGCTATGGGATCTGCTACTCAAATTTCTATGTTTGTGGTTCCATTTAGTGTGATTGTTGCGTGGATAATGGGTATACAAATGGATCTAGACTTCAATCTTCTTGAAACTGGATGTCTTGGTTTCGCAATTATTGTTACAGCCTTCACTTTGCAGGATGGAACTTCACACTACATGAAAGGAGTCATTCTTACTTTCTGTTACGTTATTATTTCTGCATGTTTTTTTGTTCTCAAAGCTCCAGATATCAACCAATATGGCATGATCGATTTCGGAGCAGACCACCCTGTGAAGCCATCCCCGATTGAATAA 1350 0.403 MSFFSETNSRPIFPSMNVNEDLENKVDSVENISSSSIVRKKSDIALVTNNDRFQIVRNVMGNVREVMLGTKLVVLFPAVPLAVAADFYSIGRPWIFALSLLGLAPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATEMIIAILALHQNKIHVVKFSLLGSILSNLLLVLGSSLLCGGLANLKREQRYDRKQADVNSLLLLLGFLCHLLPLIFKYALAGGNHSIANCTLQLSRASSIVMLIAYVAYIFFQLKTHRKIFDAQEVEDEEDEEKAVIGFWSAFSWLVGMTLVISVLSEYVVGTIEAASDSWGISVSFISIILLPIVGNAAEHAGSVIFAFKNKLDISLGVAMGSATQISMFVVPFSVIVAWIMGIQMDLDFNLLETGCLGFAIIVTAFTLQDGTSHYMKGVILTFCYVIISACFFVLKAPDINQYGMIDFGADHPVKPSPIE 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00870 449 Pfam Sodium/calcium exchanger protein 94 251 IPR004837 GO:0016020|GO:0055085
Vifa1g00870 449 Pfam Sodium/calcium exchanger protein 279 418 IPR004837 GO:0016020|GO:0055085
Vifa1g00870 449 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 35 426 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vifa1g00870 449 NCBIfam calcium/proton exchanger 77 422 IPR004798 GO:0006816|GO:0015369
Vifa1g00870 449 FunFam Vacuolar cation/proton exchanger 123 268 - -
Vifa1g00870 449 NCBIfam calcium/proton exchanger 58 422 - -
Vifa1g00870 449 FunFam Vacuolar cation/proton exchanger 269 423 - -
Vifa1g00870 449 Gene3D - 123 266 IPR044880 -
Vifa1g00870 449 Gene3D - 270 422 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00870 Vifa-Chr1 146929110 146933407 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00870 28 428 Antiporters AT2G38170 67.647 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00870 K07300 - gmx:100816844 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03045 2 866852563 866855912 Vifa1g00870 1 146929110 146933407 PCT