Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00865 ATGGGAAGAAGAAACGACGGCGGCGGCGGCGGCGGCGGCGGAAGATCACTGCAATTCGCTCTTCGCCGTCGAGTTGAATCCTGCAAATCAAAGTACAAAACCGCAGAAGAAATCGTCGATCATCTTCGCTCAAATTACCCTGATTACCACCGAACTAAGTATCAAACCCTAATTCGATTCGTTGACGACGCTCTTCAACATTCCAACAATACTTCCACACGGAACCATAACCAAAACAACAATACCGACGCCGACGATGACGAGGAGGATGATAATCGAAGCGCTTCTCGAAAGAGACGTAAGGAAATTAACGATGAATCTGAGGATCGGTTGCAAAAGATGGAAGCACTTCACATTAAAGCAAGGATGAGTTCACAAGCTCAATCAACTTCCTCCGATTCTGCTCCGGCTAGCAGTGACGATGATGAAGAAGACGGTGCAGTTTCGACCTCGGAGGACGGGATCTACAGCGAGAAAGTTGAACCTGCTTTTGATTTGATGAAGGATATGCTGCGACATTCATATACAGGAACAAAGTCAGTACCTGTGGTGGAAGAAAAAGAAAAAGAAAAGAATGTTGAATTGGATATTGGTAATACAAGTAAGGCTACTATTACTGTCAATGCGGATGGTGGTAAATCCAAATCAGCAGCGACAACAGGGAAACACTCGAAGGGTTCGGTTTCAAATACCGGTGGTGGTAAAGGCAGTGGTGCTGTTGAGGTGAAAGGGAAAGAGGGGCCGAAGTTTAAGGATTTGGGTGGAATGAAGGCTATTTTAGAGGAGTTGATGATGGACATTGTGTCATTGTGTAATCCTCAGTTGCCTAGACATTTAGGGGTGAAACCAGTTACTGGAATTTTGTTGCATGGACCACCTGGTTGTGGAAAGACTAGACTTGCTCATGCTATAGCCAATGAAACTGGTCTTCCTTTTTATCATATTTCGGCTACCGAGGTGGTTTCAGGAGTCTCAGGTGCATCTGAAGAATATATCAGAGAGCTTTTTGATAAAGCAAAAAGGACTGCTCCATCAATTGTTTTTATTGATGAAATTGATGCAATTGCTTCAAAAAGAGAGAATTTACAGCGTGAGATGGAGAAACGAATTGTGACTCAGTTAATGACTTCCATGGATGAACCAGAGAGTTTTGATGAACCTCGTGGCTATGTTCTTGTAATAGGGGCCACAAATAGGCCGGATTCTCTTGACCCTGCTCTTAGACGGCCTGGTCGGTTTGATCGTGAGTTTCTTGTTGGCGTTCCCGATGAATCTGCCAGGGTGGAGATCCTTTCCGTGCTTACTCGCAATCTTAAACTTGATGGTTCGTTTGATCTGCACAAAATAGCCAGGTACACGCCAGGATTTGTCGGTGCTGATTTGACTGCTCTGGCTAACAAAGCTGGTAATTTGGCAATGAAGAGGATAATTGATGAAAGGAAGCGCGAATTATCTCAAGATATAATGGATGAGGATACTCAAGGCTGGTGGAAAGAACCTTGGTTGCCTGAAGAAATAAATAAGCTTGCTATCAAAATGTCTGATTTTGAGGAAGCAGCCAAAATGGTGCAGCCTTCAGCAAGAAGAGAAGGGTTCTCTTCCATTCCTAATGTTAAATGGGAAGATGTTGGCGGGCTTGATTTATTAAGGCATGAGTTTGATCGCTATATTGTAAAGCGTATTAAATATCCTGAGTTGTATGAGGGAATTGGGATGAATCTCGAGTCTGGATTTTTACTATATGGACCTCCAGGATGTGGTAAAACACTTATTGCAAAGGCTGTTGCCAATGAGGCGGGAGCTAATTTCATTCATATTAAGGGACCCGAGCTTCTAAATAAGTATGTTGGGGAAAGCGAGCTTGCAGTGCGGACATTGTTTAGTCGTGCAAGGACTTGTGCACCATGTGTACTATTTTTTGACGAGGTTGATGCTCTGACTACCGAACGCGGTAAAGAAGGTGGATGGGTTATTGAAAGACTATTGAACCAGTTGCTTATTGAGTTAGATGGTGCTGAGAATCGGAGAGGTGTATTTGTAATTGGTGCAACAAATAGACCCGAGGTGATGGACCGCGCTCTCTTGCGGCCTGGTAGATTCGGTAAACTGCTTTATGTTCCTCTTCCAAGCCCAGATGACCGTGTTTTGATATTGAAAGCTCTTGTAAGGAATAAACATATTGATTCTAGTGTGGATTTGAGTGCCATTGGAAGAATGGAATCATGTGAAAACCTTAGTGGTGCCGATCTTGCAGAATTGATGAATGAAGCAGTAATGGCTGCTCTTGATGAGAAGTTGAGCTCAACTGAGACAACATCGCTGATCATTAAGACAAGTCATTTTGAGCTAGCACTAAGTAAAGCTTCCCCGTCTGTGTCGGACAAGCAAAGGCAGTACTACGAGCGTTTGTCAAAGAGCCTAAGAGCAGTATGA 2433 0.4377 MGRRNDGGGGGGGGRSLQFALRRRVESCKSKYKTAEEIVDHLRSNYPDYHRTKYQTLIRFVDDALQHSNNTSTRNHNQNNNTDADDDEEDDNRSASRKRRKEINDESEDRLQKMEALHIKARMSSQAQSTSSDSAPASSDDDEEDGAVSTSEDGIYSEKVEPAFDLMKDMLRHSYTGTKSVPVVEEKEKEKNVELDIGNTSKATITVNADGGKSKSAATTGKHSKGSVSNTGGGKGSGAVEVKGKEGPKFKDLGGMKAILEELMMDIVSLCNPQLPRHLGVKPVTGILLHGPPGCGKTRLAHAIANETGLPFYHISATEVVSGVSGASEEYIRELFDKAKRTAPSIVFIDEIDAIASKRENLQREMEKRIVTQLMTSMDEPESFDEPRGYVLVIGATNRPDSLDPALRRPGRFDREFLVGVPDESARVEILSVLTRNLKLDGSFDLHKIARYTPGFVGADLTALANKAGNLAMKRIIDERKRELSQDIMDEDTQGWWKEPWLPEEINKLAIKMSDFEEAAKMVQPSARREGFSSIPNVKWEDVGGLDLLRHEFDRYIVKRIKYPELYEGIGMNLESGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCAPCVLFFDEVDALTTERGKEGGWVIERLLNQLLIELDGAENRRGVFVIGATNRPEVMDRALLRPGRFGKLLYVPLPSPDDRVLILKALVRNKHIDSSVDLSAIGRMESCENLSGADLAELMNEAVMAALDEKLSSTETTSLIIKTSHFELALSKASPSVSDKQRQYYERLSKSLRAV 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00865 810 PANTHER AAA-FAMILY ATPASE 88 807 - -
Vifa1g00865 810 MobiDBLite consensus disorder prediction 122 136 - -
Vifa1g00865 810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 536 805 IPR027417 -
Vifa1g00865 810 Gene3D - 536 801 IPR027417 -
Vifa1g00865 810 MobiDBLite consensus disorder prediction 208 243 - -
Vifa1g00865 810 Pfam AAA+ lid domain 730 781 IPR041569 -
Vifa1g00865 810 Pfam AAA+ lid domain 444 479 IPR041569 -
Vifa1g00865 810 ProSitePatterns AAA-protein family signature. 391 409 IPR003960 GO:0005524|GO:0016887
Vifa1g00865 810 SMART AAA_5 283 423 IPR003593 GO:0016887
Vifa1g00865 810 SMART AAA_5 574 710 IPR003593 GO:0016887
Vifa1g00865 810 Gene3D - 709 786 - -
Vifa1g00865 810 FunFam Ribosome biogenesis ATPase RIX7 239 420 - -
Vifa1g00865 810 MobiDBLite consensus disorder prediction 208 234 - -
Vifa1g00865 810 MobiDBLite consensus disorder prediction 68 156 - -
Vifa1g00865 810 MobiDBLite consensus disorder prediction 91 117 - -
Vifa1g00865 810 Gene3D - 234 420 IPR027417 -
Vifa1g00865 810 FunFam ATPase, AAA family protein 536 731 - -
Vifa1g00865 810 FunFam Cell division control protein 48 homolog C 422 530 - -
Vifa1g00865 810 Pfam ATPase family associated with various cellular activities (AAA) 579 707 IPR003959 GO:0005524|GO:0016887
Vifa1g00865 810 Pfam ATPase family associated with various cellular activities (AAA) 287 420 IPR003959 GO:0005524|GO:0016887
Vifa1g00865 810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 526 IPR027417 -
Vifa1g00865 810 ProSitePatterns AAA-protein family signature. 678 696 IPR003960 GO:0005524|GO:0016887
Vifa1g00865 810 Gene3D - 422 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00865 Vifa-Chr1 146793508 146806102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00865 507 791 Calmodulin-binding Proteins AT3G56690 44.599 7.42e-68 241