Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00864 ATGGAAAAGGACAAATCTTTGGGTCTTGGCGGTGGTTTTCCGCCTCCGTCGGGACGTTTTACGGGTTATTCTCCTACTGGGAGTGGTTTCAATGTGAAATCGGAACCTTCGTCGTCGTCGTTTCCGCCGCTTGCTCCTGCTACTAGTTCAGATTCTAGTGGTTTTAGTCAGGATATTAGCAGAATGTCTGTTAATCCTCCGAGGAATAGAGGTCATAGGCGTGCTCATTCTGAGATTCTTACACTGCCTGATGATATTAGCTTTGATAGTGACCTTGGTGTAGTTGGTGGTGCTGATGGGCCGTCGTTCTCTGATGATACTGAGGAAGACTTGCTGTCGATGTACCTTGATATGGATAAGTTCAATTCGTCGTCTGCAACATCAACGTTTCAAATGGGGCAGGCTTCGGGAGCAGGTAGTTCTTCTGGAGAGAATGCTGCCGTTGGTAACAATGAAAGGCCTAGAATTAGACACCAGCACAGCCAATCCATGGATGGGTCAACAACCATCAAACCTGAGATGTTAGTCTCGGGTTCAGAAGACTTGTCTGCAGCTGATTCCAAAAAAGCAATGTCTGCGGCAAAGCTTGCAGAACTTGCCTTGATTGACCCAAAGCGTGCAAAAAGGATATGGGCAAATAGGCAGTCTGCTGCAAGGTCAAAAGAGAGGAAGATGCGATACATTGCTGAGCTTGAAAGGAAAGTGCAGACACTGCAAACAGAAGCAACATCTTTGTCTGCACAATTAACTCTCTTGCAGAGAGATACAAACGGACTGAATTCTGAGAACAGTGAGCTGAAGCTGCGATTGCAAACCATGGAACAACAAGTTCACTTGCAGGATGCTCTAAATGATGCATTAAAAGAGGAAATTCAGCATTTGAAAGTACTGACTGGGCAAGCTATACCACCAAATGGAGGACCTATGATGAACTTTGCATCTTTTGGAGGGGGGCAGCAGTTCTATCCAAATAATAATAATAATAATAATAATCATGCCATGCACACTCTTTTAGCTGCACAACAGTTTCAACAGCTCCAAATTCATCCTCAGAAGCAGCAGCATCAATTTCAGCATCAATTTCAACAACATCAACAACATATACAGCAGCAGCAGCAGCAAATGCAGCAGCAGCAGCAGCAGGAACAACAGCAGCAGCAACAACAATTAGGTGATTTGAAAATGAGAGCAACTACATCTCCATCCCCCAAAGATACTGTTTCATCTGATGAAAATCCTTCGGCTTCCAAGGATTGTTGA 1260 0.4452 MEKDKSLGLGGGFPPPSGRFTGYSPTGSGFNVKSEPSSSSFPPLAPATSSDSSGFSQDISRMSVNPPRNRGHRRAHSEILTLPDDISFDSDLGVVGGADGPSFSDDTEEDLLSMYLDMDKFNSSSATSTFQMGQASGAGSSSGENAAVGNNERPRIRHQHSQSMDGSTTIKPEMLVSGSEDLSAADSKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLNSENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQAIPPNGGPMMNFASFGGGQQFYPNNNNNNNNHAMHTLLAAQQFQQLQIHPQKQQHQFQHQFQQHQQHIQQQQQQMQQQQQQEQQQQQQQLGDLKMRATTSPSPKDTVSSDENPSASKDC 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00864 419 CDD bZIP_plant_RF2 206 255 IPR044759 GO:0003700|GO:0006355
Vifa1g00864 419 MobiDBLite consensus disorder prediction 1 74 - -
Vifa1g00864 419 Gene3D - 204 276 - -
Vifa1g00864 419 MobiDBLite consensus disorder prediction 346 413 - -
Vifa1g00864 419 Pfam bZIP transcription factor 205 263 IPR004827 GO:0003700|GO:0006355
Vifa1g00864 419 MobiDBLite consensus disorder prediction 21 64 - -
Vifa1g00864 419 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 203 266 IPR004827 GO:0003700|GO:0006355
Vifa1g00864 419 FunFam probable transcription factor PosF21 204 257 - -
Vifa1g00864 419 Coils Coil 361 396 - -
Vifa1g00864 419 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 40 387 - -
Vifa1g00864 419 SUPERFAMILY Leucine zipper domain 205 256 IPR046347 GO:0003700|GO:0006355
Vifa1g00864 419 MobiDBLite consensus disorder prediction 346 419 - -
Vifa1g00864 419 Coils Coil 221 290 - -
Vifa1g00864 419 SMART brlzneu 201 265 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00864 Vifa-Chr1 146676291 146680154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00864 19 340 bZIP Transcription Factor Family AT1G06070 74.018 6.39e-168 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa1g00864 bZIP_1 4.6e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00864 - - psat:127087280 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00864 1 146676291 146680154 Vifa1g00864 1 146676291 146680154 ECH